Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a15f
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60460.1 68418.m07583 sec61beta family protein similar to SP|...    40   9e-04
At3g60540.2 68416.m06772 sec61beta family protein similar to SP|...    37   0.011
At3g60540.1 68416.m06771 sec61beta family protein similar to SP|...    37   0.011
At2g45070.1 68415.m05610 sec61beta family protein similar to SP|...    35   0.034
At4g39450.1 68417.m05582 expressed protein                             28   3.9  

>At5g60460.1 68418.m07583 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 109

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
 Frame = +1

Query: 121 QSPSATSVGSGSRSPTKASAGPRTAS--GXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFY 294
           QS  +TS GS +  P  A+     A+  G                      GS  M RFY
Sbjct: 7   QSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFY 66

Query: 295 TDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           TDD+            MSL FI  V  LH++GK
Sbjct: 67  TDDAPGLKISPTVVLIMSLCFIGFVTALHVFGK 99


>At3g60540.2 68416.m06772 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +1

Query: 268 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           G+G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 33  GAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At3g60540.1 68416.m06771 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +1

Query: 268 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           G+G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 33  GAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At2g45070.1 68415.m05610 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 82

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 271 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 393
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 303 FSWSQSGA-SSCFSDVSPVYCIGI 371
           FSWS     +SCF DVSP+ C+ I
Sbjct: 397 FSWSILALIASCFPDVSPLSCLTI 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,120,168
Number of Sequences: 28952
Number of extensions: 176744
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)