Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a13f
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28540.1 68415.m03467 expressed protein                             29   3.4  
At1g67720.1 68414.m07728 leucine-rich repeat family protein / pr...    28   5.9  
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf...    28   5.9  
At4g18390.1 68417.m02729 TCP family transcription factor, putati...    27   7.8  
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ...    27   7.8  
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ...    27   7.8  

>At2g28540.1 68415.m03467 expressed protein 
          Length = 655

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -1

Query: 544 SIKERQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVHVRFAEVSISDGRIDVSILVAE 365
           S + + E  +T T  G S S S   R S  +P+ N Y  +  +E +  +G ++ SILV +
Sbjct: 254 SSQYKAEHDETRTVFGSSYSDS---RGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPD 310

Query: 364 PA 359
            A
Sbjct: 311 KA 312


>At1g67720.1 68414.m07728 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           light repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376; contains Pfam doamins
           PF00069: Protein kinase domain and PF00560: Leucine Rich
           Repeat
          Length = 929

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 469 RQSKSSPVQNNYVHVRFAEVSISDGRIDVSILVAEPAMSNNNSW 338
           + S   P+ N     ++  +S+   R DVS+L A  +MS ++ W
Sbjct: 347 KDSTQGPLLNAIEISKYLPISVKTDRSDVSVLDAIRSMSPDSDW 390


>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]; similar to rab11 binding protein GI:4512103
           from [Bos taurus]
          Length = 593

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 28/97 (28%), Positives = 46/97 (47%)
 Frame = -1

Query: 412 VSISDGRIDVSILVAEPAMSNNNSWVVGVEVGSCYGVSIVDSQRLGGTTIAPGEE*VLVV 233
           V+ +D R  +S +  +P   N N +VVG   G+C    I+D+  +        +E +L+ 
Sbjct: 348 VAWTDVRDSISAISYQP---NGNGFVVGCITGNCRFYQILDNDVI-------MDEQILIR 397

Query: 232 GRVSVYFIEKFIVRCSFKIYCVQISITVRHFNVTRVI 122
           GR  +  +E F    S KI        VR F+ T++I
Sbjct: 398 GRNRITAVE-FCPGSSEKILVSSEDSKVRIFDKTQMI 433


>At4g18390.1 68417.m02729 TCP family transcription factor, putative
           similar to TFPD (GI:6681577) [Arabidopsis thaliana];
           teosinte branched1 protein - Zea mays, PIR2:T04347
          Length = 365

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 209 DEINRNPANNQYLLFTRRNRRSSQTLTINNANSVTRSNFNANNPTVVIAHGWLSNQNTDI 388
           D I+  P+ N     T      +QTLT   ANS+++S  ++N+ T   + G LS   +++
Sbjct: 95  DSISELPSLNNTHFPTDDENHQNQTLTTVAANSLSKSACSSNSDTSKNSSG-LSLSRSEL 153

Query: 389 NPTIRD 406
               R+
Sbjct: 154 RDKARE 159


>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/85 (18%), Positives = 32/85 (37%)
 Frame = -1

Query: 532 RQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVHVRFAEVSISDGRIDVSILVAEPAMS 353
           R E + T  +    +S   +V   +     +NY   R   + +  G  +    + E  MS
Sbjct: 84  RGEGTSTIVNPRKETSSGPVVEDFEEPSAPSNYNEARIKVIGVGGGGSNAVNRMIESEMS 143

Query: 352 NNNSWVVGVEVGSCYGVSIVDSQRL 278
               W+V  ++ +     ++   RL
Sbjct: 144 GVEFWIVNTDIQAMRMSPVLPDNRL 168


>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/85 (18%), Positives = 32/85 (37%)
 Frame = -1

Query: 532 RQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVHVRFAEVSISDGRIDVSILVAEPAMS 353
           R E + T  +    +S   +V   +     +NY   R   + +  G  +    + E  MS
Sbjct: 84  RGEGTSTIVNPRKETSSGPVVEDFEEPSAPSNYNEARIKVIGVGGGGSNAVNRMIESEMS 143

Query: 352 NNNSWVVGVEVGSCYGVSIVDSQRL 278
               W+V  ++ +     ++   RL
Sbjct: 144 GVEFWIVNTDIQAMRMSPVLPDNRL 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,040
Number of Sequences: 28952
Number of extensions: 297728
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)