Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a12r
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family pr...    31   0.54 
At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family pr...    31   0.54 
At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family pr...    31   0.54 
At2g21080.1 68415.m02502 expressed protein                             28   3.8  
At3g42580.1 68416.m04420 Ulp1 protease family protein contains P...    27   8.7  
At3g12590.1 68416.m01568 expressed protein                             27   8.7  

>At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 219

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 347 RELIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNNRANFILQ 526
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 527 ETC 535
            TC
Sbjct: 172 VTC 174


>At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 226

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 347 RELIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNNRANFILQ 526
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 527 ETC 535
            TC
Sbjct: 172 VTC 174


>At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 247

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 347 RELIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNNRANFILQ 526
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 111 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 170

Query: 527 ETC 535
            TC
Sbjct: 171 VTC 173


>At2g21080.1 68415.m02502 expressed protein
          Length = 414

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 187 LYRTNLGTLKCIFWTFTCKYTKFLFFRLHKKF 92
           +YRT +  L CI +  TC+     F  LHK F
Sbjct: 194 VYRTGVFLLVCILFRLTCELQILRFRGLHKLF 225


>At3g42580.1 68416.m04420 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 903

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 9   TVIYRSEKKDKEASK*IRELLIKKMGRTNFLCKRKNK 119
           ++++R EK+D      +R L +   G   F+ KRK +
Sbjct: 247 SLVWRKEKQDPRVDNILRMLNLATSGMRKFILKRKRR 283


>At3g12590.1 68416.m01568 expressed protein
          Length = 1162

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 203 GAFTN*RFTKVKPTPPPVRRTLANCVD---PRTRTALTRLPAGAVNLTLTTRELIVAARL 373
           G+ +  R +  K  P P+RR +A+C+    P   +    +P+ A +  L      ++A  
Sbjct: 23  GSASRLRSSSSKKPPEPLRRAVADCLSSSPPPVNSHHGAIPSMAPSEALRNLRDYLSASA 82

Query: 374 TTKLRKSLSLE 406
           TT L  ++ LE
Sbjct: 83  TTDLAYNMLLE 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,491,789
Number of Sequences: 28952
Number of extensions: 187754
Number of successful extensions: 452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)