Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10r
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family...    31   0.56 
At4g30850.2 68417.m04378 expressed protein contains Pfam domain,...    29   3.0  
At4g30850.1 68417.m04377 expressed protein contains Pfam domain,...    29   3.0  
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ...    28   5.2  
At5g65620.1 68418.m08255 peptidase M3 family protein / thimet ol...    28   6.9  
At3g56320.1 68416.m06261 nucleotidyltransferase family protein c...    28   6.9  
At4g19490.2 68417.m02867 expressed protein                             27   9.2  
At4g19490.1 68417.m02866 expressed protein                             27   9.2  

>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 561

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 540 IRNRFSSSPRAANERSATTANGTTP 466
           IRN+FS+SP   + RS  + +GTTP
Sbjct: 109 IRNKFSTSPSIIDRRSRVSNSGTTP 133


>At4g30850.2 68417.m04378 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 118 KRLNLYFRL*LSFCLPDTRVFCIFYYRIKYIVSVHTYFKWKVFTNK*TENTQIEITHYKL 297
           +R NL+F   L +      + C F+  I Y  S HTY  W++F         + +  + L
Sbjct: 187 RRFNLFFWR-LDYAGISLMIVCSFFAPIYYAFSCHTY--WRLFYLSSISILGL-LAIFTL 242

Query: 298 TLTTLTAPGTNSLRAS 345
              +L+AP   S RA+
Sbjct: 243 LSPSLSAPRFRSFRAA 258


>At4g30850.1 68417.m04377 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 118 KRLNLYFRL*LSFCLPDTRVFCIFYYRIKYIVSVHTYFKWKVFTNK*TENTQIEITHYKL 297
           +R NL+F   L +      + C F+  I Y  S HTY  W++F         + +  + L
Sbjct: 187 RRFNLFFWR-LDYAGISLMIVCSFFAPIYYAFSCHTY--WRLFYLSSISILGL-LAIFTL 242

Query: 298 TLTTLTAPGTNSLRAS 345
              +L+AP   S RA+
Sbjct: 243 LSPSLSAPRFRSFRAA 258


>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
           protein similar to SP|Q9Y4I5 Tesmin
           (Metallothionein-like 5, testis-specific) {Homo
           sapiens}; contains Pfam profile PF03638:
           Tesmin/TSO1-like CXC domain
          Length = 408

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 515 QEQQMNVQLQLLMGPLQKKCLCKKSH-LFKHCF*EC 411
           ++ Q NVQ  LL+G   K C C+KS  L K+C  EC
Sbjct: 126 KDLQENVQQVLLIGKHSKGCHCRKSGCLKKYC--EC 159


>At5g65620.1 68418.m08255 peptidase M3 family protein / thimet
           oligopeptidase family protein similar to SP|P27237
           Oligopeptidase A (EC 3.4.24.70) {Salmonella
           typhimurium}; contains Pfam profile PF01432: Peptidase
           family M3
          Length = 791

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 545 VPSETDSVHHQEQQMNVQLQLLMGPLQKKCLCKKSHLF 432
           VP   +S++  +Q+++V+ Q++    + + LC  SH+F
Sbjct: 668 VPGGPESIYDVDQRVSVKTQVIPPLPEDRFLCSFSHIF 705


>At3g56320.1 68416.m06261 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 603

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 601 DDSRYGGNSSRHYNQ-KELEFHQKQIQFITKSSK 503
           DD  YG   SR  N+ +E EFH   +QFI    K
Sbjct: 111 DDDFYGQLCSRLQNEERESEFHATDVQFIPAQVK 144


>At4g19490.2 68417.m02867 expressed protein
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 510 AANERSATTANGTTPEEVPLQEK 442
           AAN R + ++NG T EEV L+E+
Sbjct: 360 AANIRGSISSNGNTGEEVKLEEE 382


>At4g19490.1 68417.m02866 expressed protein
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 510 AANERSATTANGTTPEEVPLQEK 442
           AAN R + ++NG T EEV L+E+
Sbjct: 360 AANIRGSISSNGNTGEEVKLEEE 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,130
Number of Sequences: 28952
Number of extensions: 229907
Number of successful extensions: 525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)