Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07f
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative s...    27   9.7  
At4g30160.1 68417.m04289 villin, putative similar to  villin 2 (...    27   9.7  
At3g50710.1 68416.m05548 F-box family protein contains F-box dom...    27   9.7  
At3g01780.1 68416.m00118 expressed protein est hit,                    27   9.7  
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta...    27   9.7  

>At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative
           similar to SP|P22276 DNA-directed RNA polymerase III 130
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 1150

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -3

Query: 226 LSSAVSPDLILSKSSSLKPVNCDMFYLFLHRYVR 125
           ++++V+    ++KS ++  +  +  YLFLHR+V+
Sbjct: 208 INASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVK 241


>At4g30160.1 68417.m04289 villin, putative similar to  villin 2 (VLN2)
            [Arabidopsis thaliana] GI:3415115, villin 3 (VLN3)
            [Arabidopsis thaliana] GI:3415117; contains Pfam profiles
            PF00626: Gelsolin repeat, PF02209: Villin headpiece
            domain
          Length = 974

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
 Frame = +3

Query: 366  KLSLKTPTSPS--KNAKMEEDKQNQVILQNNVEGNDE---VQVDTIEA--DKSDMTS--- 515
            K S KTP SP+   N+K +E+K+     + ++    E   +Q D  E   D+ D+ +   
Sbjct: 858  KASPKTPESPAPESNSKEQEEKKENDKEEGSMSSRIESLTIQEDAKEGVEDEEDLPAHPY 917

Query: 516  SRRSSTAPDIVRGVDFQYTEHELASHK 596
             R  +T+ D V  +D    E  L+S +
Sbjct: 918  DRLKTTSTDPVSDIDVTRREAYLSSEE 944


>At3g50710.1 68416.m05548 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 317 LINGCLIFIWLGFH**FNSFYIRIFYVLVFTL 222
           L++GC +   L     +NSF++R FYV + TL
Sbjct: 175 LLSGCPVLEELVLDKSYNSFHVRSFYVEIPTL 206


>At3g01780.1 68416.m00118 expressed protein est hit,
          Length = 1176

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 366  KLSLKTPTSPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADK-SDMTSSRRSSTAPD 542
            +++L     P K +K+EE+ +N+   +   E +DE   +  E ++  D    ++      
Sbjct: 1081 RIALLKAAQPKKTSKIEEESENEEEEEGEEEDDDEEVKEKKEKEEGKDKEEKKKKEKEKG 1140

Query: 543  IVRGVDFQYTEH 578
                +  + TEH
Sbjct: 1141 TFSKLTAEETEH 1152


>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
           antigen-related contains weak similarity to C protein
           immunoglobulin-A-binding beta antigen [Streptococcus
           agalactiae] gi|18028989|gb|AAL56250
          Length = 731

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 414 EEDKQNQVILQNNVEGNDEVQVDTIEADKSDMTSSRRSSTAPDIVRGVDFQYTEHELASH 593
           EE+++NQ    NN + N  V+  + E   S  +SS  SS++       D  Y +  +  +
Sbjct: 256 EEEEENQDSEDNNTKDNVTVESLSSEDPSSSSSSSSSSSSSSSSSSSDDESYVKEVVGDN 315

Query: 594 K 596
           +
Sbjct: 316 R 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,075
Number of Sequences: 28952
Number of extensions: 227901
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)