Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a06f
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing pr...    28   4.2  
At3g46850.1 68416.m05085 subtilase family protein contains simil...    28   4.2  
At1g26740.1 68414.m03256 expressed protein similar to 50S riboso...    28   4.2  
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    27   7.3  
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    27   9.6  

>At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 306

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 280 PGSSRQMAKSRPALSRLAPQLTGRSFTSAGSIMTDALRLARSTR 411
           PG+ RQ +        LA ++  R  T AGS   D  R+   +R
Sbjct: 56  PGTGRQFSSLEAIHRHLAGEVNDRRLTRAGSFFQDKTRVYEGSR 99


>At3g46850.1 68416.m05085 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo];
          Length = 736

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 155 SSRVDLITVSIGTDPEGTWWDAALA 81
           + +VD+ITVS+G D  GT+ +  LA
Sbjct: 266 ADKVDIITVSLGADAVGTFEEDTLA 290


>At1g26740.1 68414.m03256 expressed protein similar to 50S ribosomal
           protein L32 (SP:P80339) {Thermus thermophilus}
          Length = 134

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   SFHLVVEDKRRHNRHARHIPLGPRLLKPAQHPTRC 106
           S  L+   K++ ++H R I  GP+ LKP     RC
Sbjct: 77  SMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRC 111


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 189 VIPTKNACYISFGGEEVLKDQFEVLVPSM 275
           VIPT    +ISF G+E+ K     LVP++
Sbjct: 16  VIPTGPQVFISFRGKELRKGFISFLVPAL 44


>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
            similar to RNA-directed RNA polymerase [Lycopersicon
            esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +3

Query: 135  DEIYAGRAHHEGDIVPAKVIPTKNACYISFGGEEVLKDQFEVLVPS---MFAWQFSTNGE 305
            D+ Y  +   E  +V  KV+ TKN C +  G   VL   +EV       +    F   GE
Sbjct: 761  DQSYFRKIDEETSVVIGKVVVTKNPC-LHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGE 819

Query: 306  VPPGAVEAGSTADGEKLYFGRVNHDGCTTPGKIHP 410
             P     +G   DG++ +   V+ D    P ++ P
Sbjct: 820  RPHPNECSGGDLDGDQFF---VSWDEKIIPSEMDP 851


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,324
Number of Sequences: 28952
Number of extensions: 323986
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)