Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_C03
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 98 5e-21
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 98 5e-21
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 94 6e-20
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 94 6e-20
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 93 1e-19
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 73 1e-13
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 73 1e-13
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 73 2e-13
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 72 4e-13
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 70 1e-12
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 67 8e-12
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 66 3e-11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 66 3e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 64 6e-11
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 62 4e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 62 4e-10
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 61 7e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 60 9e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 56 2e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 3e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 56 3e-08
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 55 4e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 55 5e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 54 1e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 54 1e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 53 1e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 53 1e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 53 1e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 52 3e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 52 4e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 51 6e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 50 1e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 50 1e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 50 2e-06
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 49 2e-06
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 49 2e-06
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 49 2e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 7e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 46 2e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 46 2e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 46 2e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 46 2e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 46 3e-05
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 44 7e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 44 9e-05
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 44 9e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 44 1e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 44 1e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 43 2e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 3e-04
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 40 0.002
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 40 0.002
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 40 0.002
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 36 0.023
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 35 0.041
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 31 0.50
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 31 0.50
At5g49670.1 68418.m06150 hypothetical protein 29 3.5
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 3.5
At1g01430.1 68414.m00058 expressed protein similar to hypothetic... 29 3.5
At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containi... 28 4.7
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 28 4.7
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa... 28 6.2
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 27 8.2
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 97.9 bits (233), Expect = 5e-21
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +2
Query: 257 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 436
RT DV + F L L G+ GF++PSPIQ +P+ G D+L AK+GTG
Sbjct: 121 RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTG 180
Query: 437 KTVVFSIIALEKLNL-NNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
KT F I LEK++ NN +Q +I+ PTRE+ V K++G H K + V GG S+
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSL 239
Query: 614 NEXIXKFXKKVH 649
+ I + + VH
Sbjct: 240 KDDIMRLYQPVH 251
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 97.9 bits (233), Expect = 5e-21
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +2
Query: 257 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 436
RT DV + F L L G+ GF++PSPIQ +P+ G D+L AK+GTG
Sbjct: 121 RTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTG 180
Query: 437 KTVVFSIIALEKLNL-NNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
KT F I LEK++ NN +Q +I+ PTRE+ V K++G H K + V GG S+
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSL 239
Query: 614 NEXIXKFXKKVH 649
+ I + + VH
Sbjct: 240 KDDIMRLYQPVH 251
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 94.3 bits (224), Expect = 6e-20
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Frame = +2
Query: 257 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 436
+T DV + F L L G+ GF+KPSPIQ +P+ G D+L AK+GTG
Sbjct: 114 QTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTG 173
Query: 437 KTVVFSIIALEKLNLNNG-LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
KT F I LEK++ NN +Q MIL PTRE+ V K++ S + + V GG S+
Sbjct: 174 KTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKEL-SKYLNIQVMVTTGGTSL 232
Query: 614 NEXIXKFXKKVH 649
+ I + + VH
Sbjct: 233 RDDIMRLHQPVH 244
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 94.3 bits (224), Expect = 6e-20
Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Frame = +2
Query: 257 RTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 436
+T DV + F L L G+ GF+KPSPIQ +P+ G D+L AK+GTG
Sbjct: 114 QTADVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTG 173
Query: 437 KTVVFSIIALEKLNLNNG-LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
KT F I LEK++ NN +Q MIL PTRE+ V K++ S + + V GG S+
Sbjct: 174 KTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKEL-SKYLNIQVMVTTGGTSL 232
Query: 614 NEXIXKFXKKVH 649
+ I + + VH
Sbjct: 233 RDDIMRLHQPVH 244
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 93.5 bits (222), Expect = 1e-19
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +2
Query: 248 NSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 427
N +T DV + F L L G+ GF+KPSPIQ +P+ G D+L AK+
Sbjct: 141 NRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 200
Query: 428 GTGKTVVFSIIALEKLN-LNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
GTGKT F I LEK++ NN +Q +IL PTRE+ V K++ + K + V GG
Sbjct: 201 GTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGG 259
Query: 605 LSVNEXIXKFXKKVH 649
S+ + I + + VH
Sbjct: 260 TSLRDDIMRLYQPVH 274
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 73.3 bits (172), Expect = 1e-13
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHG-VPLGKCGFDLLLEAKSGTGKTVVFSIIAL 466
+F +M L E L G+ + GF+KPS IQ G VP K G D++ +A+SGTGKT F L
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGVL 98
Query: 467 EKLNLN-NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
++L+ + Q ++L PTRE+ I V++ +G + G+ V +GG SV E
Sbjct: 99 QQLDFSLIQCQALVLAPTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVRE 149
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 73.3 bits (172), Expect = 1e-13
Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHG-VPLGKCGFDLLLEAKSGTGKTVVFSIIAL 466
+F M +++ L G+ G++KPS IQ VP+ K G D++ +A+SGTGKT + +I
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK-GRDVIAQAQSGTGKTSMIAISVC 81
Query: 467 EKLNLNN-GLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXKK 643
+ +N+++ +QV++L+P+RE+ + I+ IG+ H + +GG S+ E I K +
Sbjct: 82 QIVNISSRKVQVLVLSPSRELASQTEKTIQAIGA-HTNIQAHACIGGKSIGEDIKKLERG 140
Query: 644 VH 649
VH
Sbjct: 141 VH 142
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 72.9 bits (171), Expect = 2e-13
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHG-VPLGKCGFDLLLEAKSGTGKTVVFSIIAL 466
+F +M L E L G+ + GF+KPS IQ G VP K G D++ +A+SGTGKT F L
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGVL 98
Query: 467 EKLNLN-NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
++L+ Q ++L PTRE+ I V++ +G ++G+ V +GG SV E
Sbjct: 99 QQLDYALLQCQALVLAPTRELAQQIEKVMRALGD-YQGVKVHACVGGTSVRE 149
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 71.7 bits (168), Expect = 4e-13
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIAL 466
+F +M L L G+ + GF+KPS IQ G+ P K G D++ +A+SGTGKT F L
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK-GLDVIQQAQSGTGKTATFCSGVL 100
Query: 467 EKLNLN-NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXKK 643
++L+++ Q ++L PTRE+ I V++ +G + G+ + +GG SV E
Sbjct: 101 QQLDISLVQCQALVLAPTRELAQQIEKVMRALGD-YLGVKAQACVGGTSVREDQRVLQSG 159
Query: 644 VH 649
VH
Sbjct: 160 VH 161
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 70.1 bits (164), Expect = 1e-12
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Frame = +2
Query: 278 VENVT-FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFS 454
+E +T F M + E L G+ GF+KPS IQ V G D++ +A+SGTGKT + +
Sbjct: 31 IEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIA 90
Query: 455 IIALEKLNLNN-GLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXK 631
+ + ++ ++ +Q +IL+PTRE+ I+ IG H + +GG SV E I K
Sbjct: 91 LSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGL-HANIQAHACIGGNSVGEDIRK 149
Query: 632 FXKKVH 649
VH
Sbjct: 150 LEHGVH 155
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 67.3 bits (157), Expect = 8e-12
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
TF + LS L + G++KP+PIQ +PL G DL A +G+GKT F++ LE
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 470 KLNLNN----GLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
+L +V+ILTPTRE+ I +I+ + + + ++GGLSV E
Sbjct: 228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL-AQFTDIKCGLIVGGLSVRE 280
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F LL L ++ SGF+ PS +Q +P G D++ +AKSG GKT VF + L++
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 473 LNLNNG-LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
+ + G + ++L TRE+ IC+ + ++ V GG+++
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F LL L ++ SGF+ PS +Q +P G D++ +AKSG GKT VF + L++
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 473 LNLNNG-LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
+ + G + ++L TRE+ IC+ + ++ V GG+++
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 64.5 bits (150), Expect = 6e-11
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Frame = +2
Query: 239 DIRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 418
D + + I+ N TF S+ LS+ T + GF + + IQ +P G D+L
Sbjct: 138 DKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGA 197
Query: 419 AKSGTGKTVVFSIIALE-----KLNLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLN 583
A++G+GKT+ F I A+E K NG V+++ PTRE+ V K++ +H
Sbjct: 198 ARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYH-SQT 256
Query: 584 VEXVMGG 604
V V+GG
Sbjct: 257 VGKVIGG 263
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 61.7 bits (143), Expect = 4e-10
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Frame = +2
Query: 275 IVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFS 454
I+ NVTF S+ LSE T + GFQ + IQ + G D+L A++G+GKT+ F
Sbjct: 85 IMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFL 144
Query: 455 IIAL-----EKLNLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
I A+ E+ + NG V+++ PTRE+ +V +++ HH V V+GG
Sbjct: 145 IPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHH-SQTVSMVIGG 198
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 61.7 bits (143), Expect = 4e-10
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F S+ L + G++ P+PIQ +PL G D++ A++G+GKT F I LEK
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 473 LNLN---NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXK 640
L + G++ +IL+PTR++ K++G L V ++GG S+ + + K
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGK-FTDLRVSLLVGGDSMEDQFEELTK 147
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 60.9 bits (141), Expect = 7e-10
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F + +S+ T GL + + + +Q +P CG D+L A++G+GKT+ F I LEK
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 473 LNL-----NNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
L+ +G+ +I++PTRE+ A V+ ++G HK + ++GG
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHK-FSAGLLIGG 180
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 60.5 bits (140), Expect = 9e-10
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F + L+E+ + G +KP+P+Q H VP G D+L A++G+GKT F++ L +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 473 LNLN-NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
L + G+ +++TPTRE+ + + K +GS L ++GG+ +
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKALGS-CLNLRCSVIVGGMDM 166
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F LS TL G+ +GF+ + +Q +PL G D+L +AK+GTGKTV F + ++E
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 473 L---------NLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
+ N + + V+++ PTRE+ + +H + V+ V+GG
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGG 194
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 55.6 bits (128), Expect = 3e-08
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Frame = +2
Query: 299 SMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL- 475
S L SE L + +G++KPSPIQ+ +PLG D++ A++G+GKT F + L +
Sbjct: 318 SKLTSEL-LKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYIS 376
Query: 476 --------NLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
N G +++ PTRE+ I + + +H+ G V ++GG S+ E
Sbjct: 377 RLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF-AHYLGFRVTSIVGGQSIEE 431
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 55.6 bits (128), Expect = 3e-08
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 12/116 (10%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKC--GFDLLLEAKSGTGKTVVFSIIAL 466
F +S TL L +SG K + +Q L +C G D L++AK+GTGK++ F + A+
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQ--DATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
Query: 467 EKL--NLNNG--------LQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
E + +N+G + V+IL PTRE+ + I K + +H G+ V+ ++GG
Sbjct: 435 ETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGG 490
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
+F + ++ L + +GF +P+PIQ G P+ G DL+ A++G+GKT+ + + A+
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 470 KLNL------NNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXK 631
+N +G V++L PTRE+ I + GS K + + GG+ +
Sbjct: 160 HVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSK-IKTTCIYGGVPKGPQVRD 218
Query: 632 FXKKV 646
K V
Sbjct: 219 LQKGV 223
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.8 bits (126), Expect = 5e-08
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Frame = +2
Query: 287 VTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 466
+TF S L L L+S+GF P+PIQ P+ D++ AK+G+GKT+ + I A
Sbjct: 435 ITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF 494
Query: 467 EKL-----NLNNGLQVMILTPTREIXAXICDVIKQIG 562
L + NG V+IL PTRE+ I D + G
Sbjct: 495 ILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFG 531
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 53.6 bits (123), Expect = 1e-07
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
TF + L E + + KP+P+Q H +P+ G DL+ A++G+GKT F +
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 470 KLNLNNGLQ-----------VMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVN 616
+ + +Q +IL+PTRE+ + I D K+ S+ G+ V GG +N
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKF-SYQTGVKVVVAYGGTPIN 278
Query: 617 EXIXKFXKKV 646
+ + + + V
Sbjct: 279 QQLRELERGV 288
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 53.6 bits (123), Expect = 1e-07
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKC--GFDLLLEAKSGTGKTVVFSIIAL 466
F +S TL L +SG K + +Q L +C G D L++AK+GTGK++ F + A+
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQ--DATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
Query: 467 EKL--NLNNGLQV--------MILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
E + +N+G V +IL PTRE+ + I K + H G+ V+ ++GG
Sbjct: 388 ETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGG 443
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 323 LAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL------EKLNLN 484
L + GF +P+PIQ G P+ G DL+ A++G+GKT+ + + AL +L +
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD 236
Query: 485 NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
+G V+IL PTRE+ I + ++ G G+ + GG
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGL-RSGVRSTCIYGG 275
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 323 LAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL------EKLNLN 484
L + GF +P+PIQ G P+ G DL+ A++G+GKT+ + + AL +L +
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQD 236
Query: 485 NGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
+G V+IL PTRE+ I + ++ G G+ + GG
Sbjct: 237 DGPIVLILAPTRELAVQIQEESRKFGL-RSGVRSTCIYGG 275
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 53.2 bits (122), Expect = 1e-07
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Frame = +2
Query: 347 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL-----EKLNLNNGLQ----- 496
F+KPSPIQ H P G DL+ AK+G+GKT+ F I A+ + + G +
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 497 VMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLS 610
++L+PTRE+ I DV+++ G GL V GG S
Sbjct: 194 CLVLSPTRELAVQISDVLREAG-EPCGLKSICVYGGSS 230
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 52.4 bits (120), Expect = 3e-07
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF------ 451
TF + L E + + KP+P+Q + +P+ G DL+ A++G+GKT F
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 452 SIIALEKLNLNNGLQ-----VMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVN 616
I+ + + G++ +IL+PTRE+ I D ++ S+ G+ V GG VN
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKF-SYQTGVKVVVAYGGTPVN 265
Query: 617 EXIXKFXKKV 646
+ I + + V
Sbjct: 266 QQIRELERGV 275
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 51.6 bits (118), Expect = 4e-07
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Frame = +2
Query: 287 VTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 466
+TFTS L L L ++G+ P+PIQ+ +P G LL A +G+GKT F + +
Sbjct: 110 LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
Query: 467 EKLNLNNGLQ---------VMILTPTREIXAXICDVIKQIGSHHKGL--NVEXVMGG 604
+ + M+L PTRE+ + D K +G KGL V+GG
Sbjct: 170 SRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG---KGLPFKTALVVGG 223
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 472
F LS +L + +GF+ + +Q +P+ G D+L +AK+GTGKTV F + A+E
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443
Query: 473 L---------NLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
+ + + V+++ PTRE+ + + +H + V+ V+GG
Sbjct: 444 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGG 496
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Frame = +2
Query: 248 NSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 427
+ TR + + F LS +L + +G++ + +Q +P+ G D+L +AK+
Sbjct: 41 DKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKT 100
Query: 428 GTGKTVVFSIIALEKL---------NLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGL 580
GTGKTV F + ++E + N + +++ PTRE+ + +H +
Sbjct: 101 GTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSI 160
Query: 581 NVEXVMGG 604
V+ V+GG
Sbjct: 161 GVQVVIGG 168
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Frame = +2
Query: 308 LSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN 487
LSE + L SGF+ +P+Q +P D++++A +G+GKT+ F + +E + +N
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 488 GL-----QVM--ILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
QVM I++PTRE+ A I V + S +N ++GG V
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREV 131
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 49.6 bits (113), Expect = 2e-06
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Frame = +2
Query: 263 RDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKT 442
R V+ E+ F+S ++S + ++KP+ IQ +P+ G D++ AK+G+GKT
Sbjct: 225 RPVKTFEDCGFSSQIMS-----AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKT 279
Query: 443 VVF------SIIALEKLNLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
F I+ +L + G +I PTRE+ I K+ + GL V V GG
Sbjct: 280 AAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAY-GLRVSAVYGG 338
Query: 605 LSVNE 619
+S +E
Sbjct: 339 MSKHE 343
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Frame = +2
Query: 323 LAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IALEKLNLNN-- 487
L ++S+GF P+PIQ P+ G D++ AK+G+GKT+ + I + L+++ ++
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM 229
Query: 488 GLQVMILTPTREIXAXICDVIKQIG 562
G +++L+PTRE+ I + + G
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Frame = +2
Query: 323 LAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IALEKLNLNN-- 487
L ++S+GF P+PIQ P+ G D++ AK+G+GKT+ + I + L+++ ++
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM 229
Query: 488 GLQVMILTPTREIXAXICDVIKQIG 562
G +++L+PTRE+ I + + G
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFG 254
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Frame = +2
Query: 323 LAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IALEKLNLNN-- 487
L ++S+GF P+PIQ P+ G D++ AK+G+GKT+ + I + L+++ ++
Sbjct: 170 LREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM 229
Query: 488 GLQVMILTPTREIXAXICDVIKQIG 562
G +++L+PTRE+ I + + G
Sbjct: 230 GPTILVLSPTRELATQIQEEAVKFG 254
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 317 FTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN--LNNG 490
+ L L GF++P+PIQ +P+ G + A +G+GKT F L KL +G
Sbjct: 151 YILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDG 210
Query: 491 LQVMILTPTREIXA 532
++ +IL+P RE+ A
Sbjct: 211 IRAVILSPARELAA 224
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI---IA 463
F S L+ + S+GF PSPIQ P+ D++ AK+G+GKT+ + I +
Sbjct: 231 FNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 290
Query: 464 LEKLNLNN--GLQVMILTPTREIXAXI 538
L++++ ++ G +++L+PTRE+ I
Sbjct: 291 LQRIHNDSRMGPTILVLSPTRELATQI 317
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Frame = +2
Query: 344 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE-------KLNLNNGLQVM 502
GF+ P+ +Q +P+ G D+L+ A +GTGKT+ + + K++ ++G +
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 503 ILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
++ PTRE+ + + ++++ + VMGG
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGG 142
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Frame = +2
Query: 308 LSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN 487
LSE + L SGF+ +P+Q +P D++++A +G+GKT+ F + +E + +N
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 488 GL-----QVM--ILTPTREIXAXICDVIKQI 559
QVM I++PTRE+ A I V + +
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 344 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGLQVMILTPTR 520
GF P+ IQ +P G D +L A++G+GKT+ + ++ +N + +Q +I+ PTR
Sbjct: 95 GFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTR 154
Query: 521 EIXAXICDVIKQIGS 565
E+ + V + + +
Sbjct: 155 ELGMQVTKVARMLAA 169
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Frame = +2
Query: 239 DIRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 418
DI T DV N TF + L + + + +P+P+Q H +P+ DL+
Sbjct: 136 DIPVETSGGDVPPPVN-TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 419 AKSGTGKTVVFSIIALEKLNLNNGLQ-----------VMILTPTREIXAXICDVIKQIGS 565
A++G+GKT F + + + ++ +IL+PTRE+ I D K+ S
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF-S 253
Query: 566 HHKGLNVEXVMGGLSVNEXIXKFXK 640
+ G+ V GG +++ + + +
Sbjct: 254 YQTGVKVVVAYGGTPIHQQLRELER 278
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Frame = +2
Query: 239 DIRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 418
DI T DV N TF + L + + + +P+P+Q H +P+ DL+
Sbjct: 136 DIPVETSGGDVPPPVN-TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 419 AKSGTGKTVVFSIIALEKLNLNNGLQ-----------VMILTPTREIXAXICDVIKQIGS 565
A++G+GKT F + + + ++ +IL+PTRE+ I D K+ S
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF-S 253
Query: 566 HHKGLNVEXVMGGLSVNEXIXKFXK 640
+ G+ V GG +++ + + +
Sbjct: 254 YQTGVKVVVAYGGTPIHQQLRELER 278
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF----SII 460
F M L L G P+PIQ+ G+P+ G D++ A +G+GKT+VF I+
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIIL 158
Query: 461 ALEK-----LNLNNGLQVMILTPTREIXAXICDVIKQ-----IGSHHKGLNVEXVMGGLS 610
AL++ + G +++ P+RE+ DV++Q + + L +GG+
Sbjct: 159 ALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVD 218
Query: 611 VNEXIXKFXKKVH 649
+ + K VH
Sbjct: 219 MRSQLDVVKKGVH 231
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 44.4 bits (100), Expect = 7e-05
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Frame = +2
Query: 263 RDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKT 442
R +Q TS +L TL L ++KP PIQ +P+ G D + AK+G+GKT
Sbjct: 393 RPIQFWHQTGLTSKILD--TLKKL---NYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKT 447
Query: 443 VVFSIIALEKL------NLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGG 604
+ F + L + +G +++ PTRE+ I I++ S G+ V GG
Sbjct: 448 LGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKF-SKALGIICVPVYGG 506
Query: 605 LSVNEXIXKFXK 640
V + I + +
Sbjct: 507 SGVAQQISELKR 518
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 44.0 bits (99), Expect = 9e-05
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Frame = +2
Query: 248 NSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 427
+S R + ++VEN F + LSE + L + P+ IQ G+P ++L + +
Sbjct: 101 SSIRKKSKKLVEN--FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHT 158
Query: 428 GTGKTVVF--SIIAL---EKLNLNNGL-----QVMILTPTREIXAXICDVIKQIGSHHKG 577
G+GKT+ + I+ L ++ NL + ++L PTRE+ + V K I SHH
Sbjct: 159 GSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSI-SHHAR 217
Query: 578 LNVEXVMGG 604
V GG
Sbjct: 218 FRSILVSGG 226
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 44.0 bits (99), Expect = 9e-05
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Frame = +2
Query: 347 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL------NLNNGLQVMIL 508
++KP PIQ +P+ G D + AK+G+GKT+ F + L + +G +++
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 509 TPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNEXIXKFXK 640
PTRE+ I I++ S G+ V GG V + I + +
Sbjct: 609 APTRELVQQIHSDIRKF-SKPLGIRCVPVYGGSGVAQQISELKR 651
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 404 DLLLEAKSGTGKTVVFSIIALEKLNLNNG-LQVMILTPTREIXAXICDVIKQIGSHHKGL 580
D++ +AKSG GKT VF + L+++ + G + ++L TRE+ IC+ + ++
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 581 NVEXVMGGLSV 613
V GG+++
Sbjct: 62 KVSVFYGGVNI 72
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Frame = +2
Query: 308 LSEFTLAGLISSGFQKPSPIQLHGVPLGKCGF-DLLLEAKSGTGKTVVFSIIALEKLNLN 484
LS + L S F+ +P+Q +PL C + D+ ++A +G+GKT+ F + +E L +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPL-LCSYKDVAVDAATGSGKTLAFVVPLVEILRRS 81
Query: 485 NGL-----QVM--ILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSV 613
QVM I++PTRE+ I +V + S +N ++GG V
Sbjct: 82 TSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREV 131
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 42.7 bits (96), Expect = 2e-04
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Frame = +2
Query: 293 FTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI----I 460
F M L L G +P+PIQ+ G+P+ G D++ A +G+GKT+VF + I
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 461 ALEK-----LNLNNGLQVMILTPTREIXAXICDVIKQ-----IGSHHKGLNVEXVMGGLS 610
AL++ + G +I+ P+RE+ +V++Q + + + L +GG+
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGID 267
Query: 611 VNEXIXKFXKKVH 649
+ + + VH
Sbjct: 268 MRSQLEVVKRGVH 280
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +2
Query: 245 RNSTRTRDVQIVENV--TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLE 418
RN + Q E +F + L + L G +KP+ IQ +P G D++
Sbjct: 30 RNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVAR 89
Query: 419 AKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIXAXICDVIKQI 559
AK+G+GKT+ + + L+KL + + L P+ I ++ +Q+
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +2
Query: 281 ENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSII 460
+ + + + +S + L S G +K PIQ + G D++ A++GTGKT+ F I
Sbjct: 102 DGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 161
Query: 461 ALEKL---NLNNGL----QVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
++K+ N +G ++L PTRE+ V K+ L+ + GG + +
Sbjct: 162 IIDKIIKYNAKHGRGRNPLCLVLAPTRELAR---QVEKEFRESAPSLDTICLYGGTPIGQ 218
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Frame = +2
Query: 281 ENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSII 460
+ + + +S + L G +K PIQ + G D++ A++GTGKT+ F I
Sbjct: 114 DGLAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 173
Query: 461 ALEKL---NLNNGL----QVMILTPTREIXAXICDVIKQIGSHHKGLNVEXVMGGLSVNE 619
++K+ N +G Q ++L PTRE+ V K+ L+ + GG + +
Sbjct: 174 IIDKIIKFNAKHGRGKNPQCLVLAPTRELAR---QVEKEFRESAPSLDTICLYGGTPIGQ 230
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Frame = +2
Query: 290 TFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 469
+F + L + L L GF P+ +Q VP G D ++++ +G+GKT+ + + L
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 470 KL--------------NLNNGLQVMILTPTREIXAXIC-DVIKQIGSHHKGLNVEXVMGG 604
++ + +Q MI+ P+RE+ I +V K +G H+ + V+ ++GG
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRM-VQQLVGG 229
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 35.9 bits (79), Expect = 0.023
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Frame = +2
Query: 236 HDIRNSTRTRDVQIVENVTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLL 415
+D+ + E + + + L + L G PIQ + G D++
Sbjct: 85 YDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIA 144
Query: 416 EAKSGTGKTVVFSIIALEKLNLNNG-----------LQVMILTPTREIXAXICDVIKQIG 562
AK+GTGKT+ F I +++L G + ++L PTRE+ + IK+
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESA 204
Query: 563 SHHKGLNVEXVMGGLS 610
+ L+ V GG+S
Sbjct: 205 PY---LSTVCVYGGVS 217
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 287 VTFTSMLLSEFTLAGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKT 442
V++ S+ LS+ L SGF +PS Q +P G D+++ A++G+GKT
Sbjct: 80 VSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Frame = +2
Query: 332 LISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE-----------KLN 478
L ++G + PIQ + G DL+ A++G GKT+ F + LE K+
Sbjct: 111 LKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMG 170
Query: 479 LNNGLQVMILTPTREI 526
V++L PTRE+
Sbjct: 171 YGRSPSVLVLLPTREL 186
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 31.5 bits (68), Expect = 0.50
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Frame = +2
Query: 371 LHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQ---------VMILTPTRE 523
+ +P G LL A +G+GKT F + + + + M+L PTRE
Sbjct: 1 MQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRE 60
Query: 524 IXAXICDVIKQIGSHHKGL--NVEXVMGG 604
+ + D K +G KGL V+GG
Sbjct: 61 LCVQVEDQAKMLG---KGLPFKTALVVGG 86
>At5g49670.1 68418.m06150 hypothetical protein
Length = 1184
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 229 FSS*YKKQHKDS*CSNSGKCYVHFHASFRIYTSRIDIIGVPKT 357
FSS YK SG C F A F++ TSR ++ V T
Sbjct: 1058 FSSYYKSCQSLRLSDGSGACKEGFQAGFKMSTSRTSLLSVSVT 1100
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +2
Query: 410 LLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIXAXICDVIKQIGSHHKGLNVE 589
LL+ + GK +K + L+ +I+TPTRE+ + + ++ + + + V
Sbjct: 253 LLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLEN-AAKNLSVKVV 311
Query: 590 XVMGGL 607
++GG+
Sbjct: 312 PIVGGM 317
>At1g01430.1 68414.m00058 expressed protein similar to hypothetical
protein GB:CAB80917 GI:7267605 from [Arabidopsis
thaliana]
Length = 456
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 459 IIENTTVFPVPDFASSNKSKPHLPSG 382
+I N+TV PVP SS +S P PSG
Sbjct: 45 LITNSTVSPVPTVRSSPESLPPDPSG 70
>At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 511
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 278 LFEHHESLCCFLYHEL 231
LF+HH++ C FLY++L
Sbjct: 38 LFDHHQNSCTFLYNKL 53
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 289 NIFHYLNITSPCAVSYIMS*RHNGNSDSLLSLKSG*FDLRFQWTLWRI 146
N H I+SP + ++ +GNS +SL F +W L RI
Sbjct: 564 NTMHLAAISSPSVLCGLLDVAKSGNSGEFISLTRSIFISILEWLLLRI 611
>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P98200, {Bos taurus} SP|Q29449, {Homo
sapiens} SP|O43520; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1200
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 200 VFKKWLIRFKISVDFMEDPEKLRPAVLFHFPTFVHFHRY 84
V K+W +R S F DP++ A ++HF T V + Y
Sbjct: 337 VMKRWYLRPDSSSIFF-DPKRAPVAAIYHFLTAVMLYSY 374
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 366 IGDGFWNPDDINPASVNSERSME 298
+ G WNP D+N + SE S++
Sbjct: 171 LSGGAWNPHDVNSVAATSESSIQ 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,793
Number of Sequences: 28952
Number of extensions: 257571
Number of successful extensions: 681
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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