Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B17
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13560.1 68418.m01566 expressed protein weak similarity to SP... 31 0.88
At2g27320.1 68415.m03284 hypothetical protein contains Pfam pr... 30 1.5
At1g53080.1 68414.m06010 legume lectin family protein 30 1.5
At1g34355.1 68414.m04265 forkhead-associated domain-containing p... 30 1.5
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 2.0
At4g00070.1 68417.m00007 zinc finger protein-related contains si... 29 2.0
At3g12720.1 68416.m01589 myb family transcription factor contain... 29 3.6
At2g23290.1 68415.m02780 myb family transcription factor 29 3.6
At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase / x... 28 4.7
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom... 28 4.7
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 27 8.2
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 27 8.2
>At5g13560.1 68418.m01566 expressed protein weak similarity to
SP|O42184 Restin (Cytoplasmic linker protein-170)
(CLIP-170) {Gallus gallus}
Length = 679
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 633 KNRGPPSQRHPSADRGSGPVVPPRFLLRK 547
KN GP S++ P+AD+G V PR +L +
Sbjct: 491 KNLGPGSEKPPNADQGDNQVSNPRKILEE 519
>At2g27320.1 68415.m03284 hypothetical protein contains Pfam
profile PF03080: Arabidopsis proteins of unknown
function
Length = 339
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -2
Query: 145 YTVRHIFQKSSHFSQIKS*NDIKSNTIVFEVDNTR 41
Y H F KSSHFS++K N TI FE TR
Sbjct: 296 YFPSHDFYKSSHFSKVKVKNS-NYETIDFEKQRTR 329
>At1g53080.1 68414.m06010 legume lectin family protein
Length = 283
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 563 DSCFGRVQDYHISIGVVSVLNQVSEKTEY 477
D FG + D H+ + + SV ++VSEK Y
Sbjct: 159 DKRFGDINDNHVGVNINSVNSKVSEKAGY 187
>At1g34355.1 68414.m04265 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1477
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 617 PVSGIPAQTEAVDQLFRHDSCFGRVQDYHISIGVVSVLNQVSEKTEYPEELENGVVSE 444
P SG TE +D F C D + +S+ +VSE+TE+ + GV SE
Sbjct: 531 PSSGCSPSTEQIDGCFETSGC--SAFDLAAEVESLSLHQEVSEETEFVTKEVMGVSSE 586
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 509 VLNQVSEKTEYPEELENGVVSENRLVPKEETLTAD 405
+ N +SEKTE ELEN E ++ E+LT D
Sbjct: 428 IQNLLSEKTELATELENCKKEEEKIKKAMESLTLD 462
>At4g00070.1 68417.m00007 zinc finger protein-related contains
similarity to zinc finger proteins (C3HC4-type RING
finger)
Length = 200
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 506 LNQVSEKTEYPEELENGVVSENRLVPKEETLTA 408
LN++ EKT Y ++ + + N++ P+EET+ +
Sbjct: 14 LNEIPEKTVYSDDGDEFLFDLNKIPPREETVNS 46
>At3g12720.1 68416.m01589 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 307
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 583 WTSCSATIPASEGCRTTTYRLVSSAS*TKSARRQNILKSLKTESSPK--TDL 434
W SC S+G +T+ L+ S + S+ NI K KT S K TDL
Sbjct: 118 WNSCIKKKLLSQGLDPSTHNLMPSHKRSSSSNNNNIPKPNKTTSIMKNPTDL 169
>At2g23290.1 68415.m02780 myb family transcription factor
Length = 309
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 643 WPMEEPRASQSAASQRRPRQWTSCSATIPASEG--CR 539
W EE QS + PR W+ S +IP G CR
Sbjct: 16 WSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCR 52
>At4g25820.1 68417.m03714 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (XTR9) identical to xyloglucan
endotransglycosylase GI:4218963 from [Arabidopsis
thaliana]
Length = 287
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 549 SEAGIVAEQLVHCLGLRWDAADWEALGSSIGH 644
+ AG V + G WD D+E LG+ GH
Sbjct: 85 NSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGH 116
>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
domain-containing protein similar to nuclear protein
5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
PF02373: jmjC domain
Length = 883
Score = 28.3 bits (60), Expect = 4.7
Identities = 26/91 (28%), Positives = 40/91 (43%)
Frame = +2
Query: 140 CIWYAFDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHFRSSQELTFDEFKYYLQH 319
CI + +L +DVV K L N L L G+ + S +EL E +++LQ+
Sbjct: 235 CIRKWYPNLSEDDVVEKCPLCRQNCNCSKCLHLNGLIE-----TSKRELAKSERRHHLQY 289
Query: 320 EVFSSLPKTVTLPIIRAI*QENKRGVLAGLP 412
+ LP L I + + E + V LP
Sbjct: 290 LITLMLPFLNKLSIFQKLEIEFEATVQGKLP 320
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -1
Query: 614 VSGIPAQTEAVDQLFRHDSCFGRVQDYHISIGVVSVLNQVSEKTEYPEELE-NGVVSENR 438
V+ +P ++ D + H FG+V D HI + Q S++ E L V NR
Sbjct: 442 VNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDAVMGNR 501
Query: 437 LV 432
+
Sbjct: 502 FI 503
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -1
Query: 614 VSGIPAQTEAVDQLFRHDSCFGRVQDYHISIGVVSVLNQVSEKTEYPEELE-NGVVSENR 438
V+ +P ++ D + H FG+V D HI + Q S++ E L V NR
Sbjct: 442 VNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDAVMGNR 501
Query: 437 LV 432
+
Sbjct: 502 FI 503
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,922
Number of Sequences: 28952
Number of extensions: 304891
Number of successful extensions: 946
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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