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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B12
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    29   2.7  
At1g09510.1 68414.m01066 cinnamyl-alcohol dehydrogenase family /...    29   3.6  
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr...    28   4.7  
At4g32320.1 68417.m04597 peroxidase family protein similar to L-...    28   6.2  
At1g23160.1 68414.m02894 auxin-responsive GH3 family protein sim...    28   6.2  
At2g01420.2 68415.m00063 auxin transport protein, putative simil...    27   8.2  
At2g01420.1 68415.m00062 auxin transport protein, putative simil...    27   8.2  
At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3...    27   8.2  
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ...    27   8.2  
At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /...    27   8.2  
At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /...    27   8.2  

>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 433 SFQHNMNFLLAKFGNMLISGWVDY--CSFHTVYSRRRETLEVSVNIVLEKRFQLS 275
           S  HNMN  L  +G+ L+  WV +  C  + + +R     E+S  +      QLS
Sbjct: 444 SLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLS 498


>At1g09510.1 68414.m01066 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]
          Length = 322

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 86  TLNDNQLELKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYF 265
           T+ D Q+EL D  ++  LN          V +    S +A +LF +     NDL +E  F
Sbjct: 91  TVTDPQIELIDPAVKGTLNVLKTCAKVSSVKRVIVTSSMAAVLFREPTLGPNDLVDESCF 150

Query: 266 S 268
           S
Sbjct: 151 S 151


>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 509

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 354 KLQ*STQP-LISILPNLASKKFILCW 428
           KL   TQP L +++PNLA K  IL W
Sbjct: 51  KLHDGTQPDLSTVIPNLAMKSTILSW 76


>At4g32320.1 68417.m04597 peroxidase family protein similar to
           L-ascorbate peroxidase [Arabidopsis thaliana]
           gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
           Peroxidase
          Length = 329

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 281 LKTF-FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQ 406
           +KTF F  D + +F+ F     +  KT ++ PAT+KH+ + S+
Sbjct: 9   VKTFLFRCDSFSSFK-FKCKFESPAKTRLLSPATEKHVVRSSR 50


>At1g23160.1 68414.m02894 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591,  auxin-responsive GH3 homologue [Arabidopsis
           thaliana] GI:11041726; contains Pfam profile PF03321:
           GH3 auxin-responsive promoter
          Length = 578

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 71  MKTATTLNDNQLELKDFVLEKIL--NNNTNRKTACVVGKFKDKS 196
           MK    L  N  +++D VLE+IL  N NTN      +G F  +S
Sbjct: 15  MKVLEDLTSNVTQIQDNVLEEILTLNANTNYLQKFFLGSFDKES 58


>At2g01420.2 68415.m00063 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 616

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
           +QS+SIL+D  L +  FSL +F  LQ
Sbjct: 498 QQSISILSDAGLGMAMFSLGLFMALQ 523


>At2g01420.1 68415.m00062 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 612

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
           +QS+SIL+D  L +  FSL +F  LQ
Sbjct: 494 QQSISILSDAGLGMAMFSLGLFMALQ 519


>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
           similar to auxin transport protein [Arabidopsis
           thaliana] gi|5817301|gb|AAD52695
          Length = 640

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
           +QS+SIL+D  L +  FSL +F  LQ
Sbjct: 522 QQSISILSDAGLGMAMFSLGLFMALQ 547


>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 619

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
           +QS+SIL+D  L +  FSL +F  LQ
Sbjct: 501 QQSISILSDAGLGMAMFSLGLFMALQ 526


>At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]; Location of EST gb|H37170,
           gb|H77227 and gb|AA605565
          Length = 322

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +2

Query: 86  TLNDNQLELKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYF 265
           T+ D Q EL D  L+  +N     K    V +    S  A +L  +     NDL +E +F
Sbjct: 91  TVTDPQTELIDPALKGTINVLNTCKQVSSVKRVILTSSTAAVLSRQPPIGPNDLVDETFF 150

Query: 266 S 268
           S
Sbjct: 151 S 151


>At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]
          Length = 369

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 86  TLNDNQLELKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYF 265
           T+ D Q EL D  L+  +N     K    V +    S  A +LF +   + +D+ +E +F
Sbjct: 138 TVKDPQTELIDPALKGTMNVLNTCKETPSVRRVILTSSTAAVLFRQPPVEASDVVDETFF 197

Query: 266 S 268
           S
Sbjct: 198 S 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,525
Number of Sequences: 28952
Number of extensions: 288686
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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