Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B01
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48160.1 68415.m06031 PWWP domain-containing protein                29   1.7  
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC...    29   1.7  
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    28   3.0  
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida...    28   3.0  
At2g06750.1 68415.m00753 hypothetical protein similar to At5g282...    27   5.3  
At5g55140.1 68418.m06875 ribosomal protein L30 family protein co...    27   6.9  
At5g51370.1 68418.m06369 F-box family protein similar to unknown...    27   6.9  
At5g46070.1 68418.m05665 guanylate-binding family protein contai...    27   6.9  
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    27   6.9  
At3g59080.1 68416.m06586 aspartyl protease family protein contai...    27   6.9  
At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C...    27   6.9  
At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C...    27   6.9  
At4g27595.1 68417.m03964 protein transport protein-related low s...    27   9.2  

>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 25   PVRISSALSLSTAHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 183
            P+R++  LS ST H+ G +    S ++L  S P++DG+  + R    H  PH   P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239


>At2g36640.1 68415.m04494 late embryogenesis abundant protein
           (ECP63) / LEA protein nearly identical to to LEA protein
           in group 3 [Arabidopsis thaliana] GI:1526424; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 448

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 324 DANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQ 464
           +A GKA E  + +++N+E+  E  R+   ++      L+E+  A  Q
Sbjct: 284 EAKGKAVETKDTAKENMEKAGEVTRQKMEEMRLEGKELKEEAGAKAQ 330


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 306 SRAALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREK 446
           ++AAL +    + +AL +     ER AEE R AH +  K A   RE+
Sbjct: 368 NQAALNEGKLSSLQALREELATTERRAEEERSAH-NATKMAAMERER 413


>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
           putative / ACC oxidase, putative nearly identical to ACC
           oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
          Length = 320

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 143 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 259
           D    IE  TK+ +KT  EQ+FN + KSK   +     +D
Sbjct: 47  DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86


>At2g06750.1 68415.m00753 hypothetical protein similar to At5g28270,
           At2g12100, At2g05450, At1g45090, At2g16180
          Length = 435

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 312 PWRLLAKALSCCSTDSEPSFQALLKSCASF 223
           PW+ LA AL     +   SF   L  CASF
Sbjct: 133 PWKKLALALIIIVVEGRTSFLLTLDRCASF 162


>At5g55140.1 68418.m06875 ribosomal protein L30 family protein
           contains similarity to 50S ribosomal protein L30
          Length = 109

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +3

Query: 300 RVSRAALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVXE 479
           R  R  L   N   +  ++Q ++ +    EE+  A  + E N  ALR  L  +  +   +
Sbjct: 45  RCHRTVLHSNNSSIRGMIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPATD 104

Query: 480 SHKLA 494
           S  ++
Sbjct: 105 SSNMS 109


>At5g51370.1 68418.m06369 F-box family protein similar to unknown
           protein (emb|CAB82288.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 355

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 285 SCCSTDSEPSFQALLKSCASFDLVSELNCC 196
           SC   D+ P  + LL+SC + + +    CC
Sbjct: 286 SCRKIDASPGPEKLLRSCPAMESLQLKRCC 315


>At5g46070.1 68418.m05665 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 1060

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 366 QNIERTAEELRKAHPDVEKNATALREKLQAA 458
           +++E+  +E RKAH    + A AL  +LQAA
Sbjct: 876 KSLEKLLDEERKAHIAANRRAEALSLELQAA 906


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 345  EALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQ 464
            EAL+ S Q   + AE LRKA  + E   + L  +L+ A +
Sbjct: 997  EALKASLQAERQAAENLRKAFSEAEARNSELATELENATR 1036


>At3g59080.1 68416.m06586 aspartyl protease family protein contains
           similarity to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 535

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 375 RCSASTVPKPPWPCRSRLRALPW 307
           RC+  + P PP PC+S  ++ P+
Sbjct: 229 RCNLVSSPDPPMPCKSDNQSCPY 251


>At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C
           (PP2C6) identical to Ser/Thr protein phosphatase 2C
           (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
           protein phosphatase 2C (GI:3608412) [Mesembryanthemum
           crystallinum]; contains Pfam PF00481 : Protein
           phosphatase 2C domain; contains TIGRFAM TIGR01573 :
           CRISPR-associated protein Cas2
          Length = 384

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 336 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKL 449
           KA +   +   +IE   EELR  HPD + N   L+ K+
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKV 224


>At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C
           (PP2C6) identical to Ser/Thr protein phosphatase 2C
           (PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
           protein phosphatase 2C (GI:3608412) [Mesembryanthemum
           crystallinum]; contains Pfam PF00481 : Protein
           phosphatase 2C domain; contains TIGRFAM TIGR01573 :
           CRISPR-associated protein Cas2
          Length = 384

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 336 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKL 449
           KA +   +   +IE   EELR  HPD + N   L+ K+
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKV 224


>At4g27595.1 68417.m03964 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 324 DANGKAKEAL---EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVXESHKL 491
           D   K KE+L   E   QNI + AEELR    D  K      E+L AA ++ V +  KL
Sbjct: 647 DQLSKVKESLVDKETKLQNIIQEAEELRVKEIDYLKKI----EELSAAKESLVEKETKL 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,645,505
Number of Sequences: 28952
Number of extensions: 155030
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)