Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_A22
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 190 5e-49
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 190 5e-49
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 190 5e-49
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 188 2e-48
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 188 2e-48
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 49 2e-06
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 33 0.12
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 2.0
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 28 3.5
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 28 3.5
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 4.6
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 4.6
At4g00670.1 68417.m00092 remorin family protein contains Pfam do... 27 6.1
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 190 bits (462), Expect = 5e-49
Identities = 92/121 (76%), Positives = 103/121 (85%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEKIA 274
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSF IRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 275 VHCTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLX 454
+ TVRG KA ++LE GLKV+EYEL NFS TG FGFGIQEHIDLGIKYDPS GIYG+
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 455 F 457
F
Sbjct: 129 F 129
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 190 bits (462), Expect = 5e-49
Identities = 92/121 (76%), Positives = 103/121 (85%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEKIA 274
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSF IRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 275 VHCTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLX 454
+ TVRG KA ++LE GLKV+EYEL NFS TG FGFGIQEHIDLGIKYDPS GIYG+
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 455 F 457
F
Sbjct: 129 F 129
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 190 bits (462), Expect = 5e-49
Identities = 92/121 (76%), Positives = 103/121 (85%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEKIA 274
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSF IRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 275 VHCTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLX 454
+ TVRG KA ++LE GLKV+EYEL NFS TG FGFGIQEHIDLGIKYDPS GIYG+
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 455 F 457
F
Sbjct: 129 F 129
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 188 bits (458), Expect = 2e-48
Identities = 91/119 (76%), Positives = 102/119 (85%)
Frame = +2
Query: 101 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEKIAVH 280
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSF IRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 281 CTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLXF 457
TVRG KA ++LE GLKV+EYEL NFS TG FGFGIQEHIDLGIKYDPS GIYG+ F
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 119
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 188 bits (458), Expect = 2e-48
Identities = 91/119 (76%), Positives = 102/119 (85%)
Frame = +2
Query: 101 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEKIAVH 280
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSF IRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 281 CTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLXF 457
TVRG KA ++LE GLKV+EYEL NFS TG FGFGIQEHIDLGIKYDPS GIYG+ F
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 119
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/111 (23%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNE 265
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 266 KIAVHCTVRGAKAEEILERGL-----KVREYE-LRXDNFSATGNFGFGIQE 400
+ + T+RG L+R + + R+++ + +F GN+ G+++
Sbjct: 139 PLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKD 189
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 32.7 bits (71), Expect = 0.12
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +2
Query: 308 EILERGLKVREYELR--XDNFSATGNFGFGIQEH---IDLGIKYDPSIG 439
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 384 PKLPVAEKLSXRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIXKDRTVYLA 223
P++ V K +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 305 EEILERGLKVREYELRXDNFSATGNFGF-GIQEHIDLG 415
E+ +E L+ RE L+ D F+ G GF G + +DLG
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLG 167
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 312 ISSALAPRTVQWTAIFSLRRIXKDRTVYLALENTGCCPVSCSNTL 178
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 94 KCNAESSYQKALLEHMCW 147
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 94 KCNAESSYQKALLEHMCW 147
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At4g00670.1 68417.m00092 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 116
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 257 RNEKIAVHCTVRGAKAEEILERGLKVREYELRXDNFSATG 376
RNEK AVH + KA+ R ++ + E F A G
Sbjct: 66 RNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAG 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,630
Number of Sequences: 28952
Number of extensions: 170057
Number of successful extensions: 472
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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