Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A21
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    89   4e-18
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    89   5e-18
At1g04030.1 68414.m00390 expressed protein                             32   0.44 
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.58 
At4g37950.1 68417.m05365 expressed protein                             28   9.5  
At3g48200.1 68416.m05259 expressed protein                             28   9.5  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +3

Query: 87  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 245
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = +3

Query: 90  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 245
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 87  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 203
           K AKSK  T   Q++K + N I    + R  S+ G DP+
Sbjct: 215 KSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 102 KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 191
           KNHT H++ R ++  G K  RKT   +T G
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 82  ASKWQSQ-RIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 240
           A  WQ++ +  Q  T+  K+  M + +  RPGT    AW+  F G   + R +T
Sbjct: 408 AGSWQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 78  KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKP 248
           ++I +A S     H+   K H N I     T  ES  G+    +  + F +  NLKP
Sbjct: 546 EQIMVATSPYIGPHSFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNLKP 602


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,632,205
Number of Sequences: 28952
Number of extensions: 155411
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)