Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A16
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1) id...   115   4e-26
At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK...   113   1e-25
At1g15165.1 68414.m01813 U-box domain-containing protein contain...    30   2.4  
At1g80590.1 68414.m09455 WRKY family transcription factor simila...    29   4.1  
At5g53940.1 68418.m06711 yippee family protein similar to mdgl-1...    29   5.4  
At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2...    29   5.4  
At2g32910.1 68415.m04035 expressed protein                             28   7.2  
At1g10455.1 68414.m01177 hypothetical protein                          28   7.2  

>At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1)
           identical to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 87

 Score =  115 bits (277), Expect = 4e-26
 Identities = 47/66 (71%), Positives = 57/66 (86%)
 Frame = +1

Query: 259 IYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPH 438
           I YS+KY+D+  EYRHVVLP E+ KL+PKN L+SE EWR+IGVQQS+GWVHY  H+PEPH
Sbjct: 4   IQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRPEPH 63

Query: 439 ILLFRR 456
           I+LFRR
Sbjct: 64  IMLFRR 69


>At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK,
           putative similar to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 83

 Score =  113 bits (273), Expect = 1e-25
 Identities = 47/73 (64%), Positives = 58/73 (79%)
 Frame = +1

Query: 259 IYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPH 438
           I YS KY+D+  EYRHVVLP E+ KL+PKN ++SE EWR+IGVQQS+GWVHY  H+PEPH
Sbjct: 4   IQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRPEPH 63

Query: 439 ILLFRRRITTPPE 477
           I+LFRR +    E
Sbjct: 64  IMLFRRPLNYQQE 76


>At1g15165.1 68414.m01813 U-box domain-containing protein contains
           Pfam profile PF04564: U-box domain
          Length = 295

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 310 VLPKEMVKLVPKNHLMSEQ-EWRSIGVQQSQ-GWVHYMTHQPEPHILLFRRRITTPPEK 480
           ++P+    LV   H + +  +W S+   + +   V Y+ H  + +  LFRR+I  PPE+
Sbjct: 162 IVPRSNSVLVIGRHALKKLIDWESVEEDKGKDSIVAYILHLMKKYSKLFRRQIFIPPEE 220


>At1g80590.1 68414.m09455 WRKY family transcription factor similar
           to zinc finger transcription factor WRKY1 GB:AAF23898
           from (Oryza sativa)
          Length = 235

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +3

Query: 300 QTCSTTKRDGKVSAKKPSNVRTRVAQHRCAAKS---RLGALYDTSARTTYFIIPK 455
           Q C  TKR  K+    P    T V QH C A +     G  Y +      ++IP+
Sbjct: 116 QNCDATKRVQKIQDNPPVYRNTYVGQHACEAPAYAVNNGGTYGSKMIKFDYVIPE 170


>At5g53940.1 68418.m06711 yippee family protein similar to mdgl-1
           [Mus musculus] GI:10441648, Yippee protein [Drosophila
           melanogaster] GI:5713279; contains Pfam profile PF03226:
           Yippee putative zinc-binding protein
          Length = 129

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 655 RTHLILKK--INANLYCRYCSERLYNNEIQIIMGPI*N*LM 539
           RTHL L    ++ + +CR     L+N  + I MGP+   LM
Sbjct: 20  RTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60


>At5g07070.1 68418.m00800 CBL-interacting protein kinase 2 (CIPK2)
           identical to CBL-interacting protein kinase 2
           [Arabidopsis thaliana] gi|9280636|gb|AAF86506
          Length = 456

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 188 QIKETAAWKYF*VEICCVTSCRETFIIPKNIMTKNMNTD 304
           ++KE  AWKYF   I  V  C    +  ++I  +N+  D
Sbjct: 105 KLKEDVAWKYFYQLISAVDFCHSRGVYHRDIKPENLLLD 143


>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +1

Query: 211 EIFLSRNLLRDIMSRDIYY---SQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSI 381
           +I + R+  R    RD Y    S+ +   +HE R    P    +  P++  +SE+E+R+ 
Sbjct: 456 QIPVPRDTDRKRSDRDRYAPGSSRGHPTRKHERRRASPPPRREEQ-PRDLYLSEREYRTY 514

Query: 382 GVQQSQGWVHYMTHQPE 432
           G++  +   HY    PE
Sbjct: 515 GLRGGETTQHYQIPPPE 531


>At1g10455.1 68414.m01177 hypothetical protein
          Length = 152

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 232 LLRDIMSRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPK 345
           L + +   D+YYS + Y  + E  H VLP+    LV K
Sbjct: 24  LKKKLSDSDLYYSAQLYLPKQEMEHFVLPEMDHDLVRK 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,278,696
Number of Sequences: 28952
Number of extensions: 371963
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)