Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A12
(909 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su... 163 1e-40
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 30 1.8
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 30 2.4
At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein... 29 5.6
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu... 28 7.4
At3g14910.1 68416.m01885 expressed protein 28 7.4
At1g67930.1 68414.m07757 Golgi transport complex protein-related... 28 7.4
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 28 9.8
At3g22490.1 68416.m02843 late embryogenesis abundant protein, pu... 28 9.8
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put... 28 9.8
>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
subunit family protein contains Pfam profile: PF00766
electron transfer flavoprotein, alpha subunit
Length = 363
Score = 163 bits (397), Expect = 1e-40
Identities = 101/269 (37%), Positives = 160/269 (59%), Gaps = 14/269 (5%)
Frame = +1
Query: 142 LNKILLIKMFAPNSRHLFLSAQLRRLQSTLXLAEHNNEVLSPATQNTLNAAKKIG--GDV 315
L K + AP S + +++ L R STL LAEH + + P T +T+ AA +G +
Sbjct: 10 LTKNKFVASNAPRSISISITS-LSRCISTLILAEHESGTIKPQTVSTVVAANSLGESSSI 68
Query: 316 SVLVAGTKCG--PAAESIAKAN-GISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHI 486
S+L+AG+ AA A + +S+VLVA+SD F+ AE L+ ++Q ++HI
Sbjct: 69 SLLLAGSGSSLQEAASQAASCHPSVSEVLVADSDKFEYSLAEPWAKLVDFVRQQGDYSHI 128
Query: 487 LAPATAFGKTVLPRVAAKLDVSPITDIIGIKDANTFVRTIYAGNAILTLE--AKDPIKVI 660
LA +++FGK +LPRVAA LDVSPITD++ I ++ F+R IYAGNA+ T+ P ++
Sbjct: 129 LASSSSFGKNILPRVAALLDVSPITDVVKILGSDQFIRPIYAGNALCTVRYTGAGPC-ML 187
Query: 661 TVRGTAFPAEPL----EGGSAAIDKAPEGDYKTDLV---EFLKQELTKSDRPELTSAKNI 819
T+R T+FP P+ E A + + +++ D V ++ + ++RP+L SA+ +
Sbjct: 188 TIRSTSFPVTPITANSESKKATVSQIDLSNFEDDSVSKSRYVGRSTQDTERPDLGSARVV 247
Query: 820 VSGGRGLKSXDNFKLLYDLXDKLNAAGGA 906
++GGR LKS +NFK++ L +KL A GA
Sbjct: 248 ITGGRALKSVENFKMIEKLAEKLGGAVGA 276
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/93 (30%), Positives = 44/93 (47%)
Frame = +1
Query: 196 LSAQLRRLQSTLXLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKAN 375
LS QLR L++ L +EH LS +L AA++ +S TK ++ + +
Sbjct: 659 LSTQLRGLEAQLESSEHRVLELS----ESLKAAEEESRTMS-----TKISETSDELERTQ 709
Query: 376 GISKVLVAESDVFKGFTAETLTPLILATQKQFK 474
+ + L A+S K AE + L L T+K K
Sbjct: 710 IMVQELTADSSKLKEQLAEKESKLFLLTEKDSK 742
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 872 SYNNLKLSXDFKPRPPDTIFLALVSSGLSDLVNSCFKNSTR 750
S+ NL+ S PP I L L +SGL+ + S F+N T+
Sbjct: 293 SWENLRCSYTNSSTPPKIISLNLSASGLTGSLPSVFQNLTQ 333
>At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 530
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 337 KCGPAAESIAKANGISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKT 516
KCG + KA+ K +A V + + E +TP I++ T++++P T KT
Sbjct: 322 KCGKCGQLGHKASRCMKPHLAHEKVTEIVSEEIITPAIVSLASA---TNLVSPITLQTKT 378
Query: 517 VL--PRVAAKLDVSPITDI 567
+ P +K+ + + DI
Sbjct: 379 PIDVPITNSKIQIDTVFDI 397
>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
N-terminal partial sequence of endo-xyloglucan
transferase GI:2244732 from [Gossypium hirsutum]
Length = 293
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 352 QQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVP 254
Q+V++WF P H SW H ++ VP
Sbjct: 139 QRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVP 171
>At3g14910.1 68416.m01885 expressed protein
Length = 455
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 259 LSPATQNTLNAAK-KIGGDVSVLVAGTKCGPAAESIAKANGISKVLVAESDVFK 417
LSP ++ A + + DV V+VAGT CG + I K +V +S + K
Sbjct: 71 LSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQSRILK 124
>At1g67930.1 68414.m07757 Golgi transport complex protein-related
similar to golgi transport complex protein (GTC90)
GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
Length = 832
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 821 TIFLALVSSGLSDLVNSCFKNSTRSVL 741
T FL+L LSDLVNS F S+R L
Sbjct: 452 TAFLSLCFGRLSDLVNSIFPMSSRGSL 478
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 682 PAEPLEG-GSAAIDKAPEGDYKTDLVEFLKQELTKSDRPELTSAKNIVSGGRGLK 843
P E +G G A++ K E K D E K+E TK + + K+ GG K
Sbjct: 84 PNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQK 138
>At3g22490.1 68416.m02843 late embryogenesis abundant protein,
putative / LEA protein, putative similar to LEA protein
in group 5 (AtECP31) [Arabidopsis thaliana] GI:1526422;
contains Pfam profile PF04927: Seed maturation protein
Length = 262
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 554 GDTSSLAATRGSTVFPKAVAGAKI 483
GDT+ LAA RG TV V GA++
Sbjct: 75 GDTTDLAAERGVTVAQTDVPGARV 98
>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 869 YNNLKLSXDFKPRPPDTIFLALVSSGLSDLVNSCFKNST 753
+ +LK S K PP I L L S GL ++ F+N T
Sbjct: 394 WEDLKCSYTNKSTPPRIISLDLSSRGLKGVIAPAFQNLT 432
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,986,443
Number of Sequences: 28952
Number of extensions: 366858
Number of successful extensions: 1117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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