Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A11
(895 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family... 35 0.084
At1g69810.1 68414.m08032 WRKY family transcription factor 35 0.084
At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid t... 33 0.34
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 31 1.0
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 30 2.4
At3g03480.1 68416.m00346 transferase family protein similar to h... 29 3.1
At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 d... 29 3.1
At4g34880.1 68417.m04947 amidase family protein similar to pepti... 29 4.2
At3g22840.1 68416.m02878 chlorophyll A-B binding family protein ... 29 4.2
At3g16530.1 68416.m02111 legume lectin family protein contains P... 29 4.2
At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family... 28 7.3
At4g09270.1 68417.m01535 hypothetical protein same aa sequence a... 28 9.6
At4g09220.1 68417.m01528 hypothetical protein 28 9.6
At3g44200.1 68416.m04739 protein kinase family protein contains ... 28 9.6
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 28 9.6
>At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family
protein
Length = 183
Score = 34.7 bits (76), Expect = 0.084
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 151 FYDPFDSFSINSFPNFPLYRPLTNVLGQNVPLIPNNGP--SEAPATEASIQSTEKSVQTP 324
+Y P S ++P+ Y P +V G N P+N P SEAP + +T P
Sbjct: 94 YYIPTTSRGNYAYPSLYQYPPPPHVYGGNYAHPPSNPPRHSEAPRQATNPHTTPPYYSLP 153
Query: 325 PPEPSDLNVLNY 360
P P L+ +Y
Sbjct: 154 APPPRTLHSYSY 165
>At1g69810.1 68414.m08032 WRKY family transcription factor
Length = 387
Score = 34.7 bits (76), Expect = 0.084
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +1
Query: 145 LRFYDPFDSFSINSFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTP 324
L ++ PF FSI++ + P T L P PN P + P + +S S P
Sbjct: 296 LSYFFPFHHFSISTTNSHP-----TVTLDLTRPNYPNQLPDDYPLSSSSFSLNFSSPDPP 350
Query: 325 PPEPSDLNVLNYS 363
PP D + LN+S
Sbjct: 351 PPSSHD-HTLNFS 362
>At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related weak hit to Pfam PF00234:
Protease inhibitor/seed storage/LTP family
Length = 219
Score = 32.7 bits (71), Expect = 0.34
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +1
Query: 157 DPFDSF-SINSFPNFPLYRPL--TN--VLGQNVPLIPNN---GPSEAPATEASIQSTEKS 312
+ F+S S++ P P + + TN V G NV P + P +P+++ + S E +
Sbjct: 117 ESFESLCSVSESPELPPLQSIQFTNPFVSGNNVSASPQSVDLAPEVSPSSD--LFSPETA 174
Query: 313 VQTPPPEPSDLNVLNYSSKD 372
PPP P L VL Y S D
Sbjct: 175 TLAPPPPPPPLPVLQYFSSD 194
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 126 VWPDLRKTSVCRATKTIESSYRKYLRWKILR 34
+W L T V R T+ +E YR+Y + KI R
Sbjct: 941 IWQVLPSTDVSRVTEHLEKHYRRYTKGKISR 971
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 145 LRFYDPFDSFSINSFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASI 294
L ++P D S +FP P+ N+ N+P P+ GPSE T +I
Sbjct: 1824 LPLFEPSDHLGFRS-EHFP---PMANLCTDNLPGEPSAGPSERAGTSTNI 1869
>At3g03480.1 68416.m00346 transferase family protein similar to
hypersensitivity-related gene GB:CAA64636 [Nicotiana
tabacum]; contains Pfam transferase family domain
PF00248
Length = 454
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 64 IGRLD--GFGSPAYGGFSQIGPYPYSFPGLRFYDPF 165
+G++D +G P YGG ++ G FPG+ FY PF
Sbjct: 385 LGKIDFGPWGKPVYGGTAKAGIA--LFPGVSFYVPF 418
>At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 747
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 214 LTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEP 336
L N G+ PL+ NG S AP I + EK P+P
Sbjct: 527 LLNGGGRPSPLLQGNGSSSAPQASKPIPTVEKPQPRSQPQP 567
>At4g34880.1 68417.m04947 amidase family protein similar to peptide
amidase [Stenotrophomonas maltophilia] GI:19744118;
contains Pfam profile PF01425: Amidase
Length = 466
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 55 VLPIGRLDGFGSPAYGGFSQIG-PYPYSFPGLRFYDP 162
VL IG G PA G+ G PY SF GLRF +P
Sbjct: 409 VLAIGGYPGINVPA--GYDSGGVPYGISFGGLRFSEP 443
>At3g22840.1 68416.m02878 chlorophyll A-B binding family protein /
early light-induced protein (ELIP) identical to early
light-induced protein; ELIP [Arabidopsis thaliana]
GI:1872544; contains Pfam profile: PF00504 chlorophyll
A-B binding protein; identical to cDNA early
light-induced protein GI:1872543
Length = 195
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 FSINSFPNFPLYRPL-TNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPP 330
FS SFPN P+ + + P N S AP+T A+ Q KS PPP
Sbjct: 27 FSAGSFPNLKRNYPVGVRCMAEGGPT--NEDSSPAPSTSAA-QPLPKSPSPPPP 77
>At3g16530.1 68416.m02111 legume lectin family protein contains Pfam
domain, PF00139: Legume lectins beta domain
Length = 276
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 306 FRTLNTSFGGRGLAWPVIRNERNVLT*NIGKRSVQREIRKRINRERV 166
F+ +N S G R AW RN+ + +T + +V++ R I RV
Sbjct: 192 FKDVNLSSGERFKAWVEFRNKDSTITVTLAPENVKKPKRALIEAPRV 238
>At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 161
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 13 PIPL*GIP*DFPPQVLPIGRLDGFGSPAYGGFSQIGPYPYSFP 141
P P +P ++PP P+G + + SP YGG G Y P
Sbjct: 65 PTPAGNLP-NYPP---PVGNIPNYPSPPYGGGDSSGSSFYGPP 103
>At4g09270.1 68417.m01535 hypothetical protein same aa sequence as
protein T8A17_30 because of location on repetitive
section
Length = 100
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 199 PLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPSDL 345
PL + + + + + IP P+ AP + ++ Q PPP P L
Sbjct: 29 PLIQGIRGMFEELMNRIPQAAPAPAPTAQQPEENVLPQQQQPPPPPPPL 77
>At4g09220.1 68417.m01528 hypothetical protein
Length = 100
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 199 PLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPSDL 345
PL + + + + + IP P+ AP + ++ Q PPP P L
Sbjct: 29 PLIQGIRGMFEELMNRIPQAAPAPAPTAQQPEENVLPQQQQPPPPPPPL 77
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 214 LTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLNYS 363
L NV+ + + PSE+P T + I + + P EP + NYS
Sbjct: 780 LINVVRDEMEVRKGATPSESPTTRSIISEPDSRTEPRPKEPDP--ITNYS 827
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 143 PGNEYGYGPI*EKPPYAGLPKPSSRP 66
P + GY P PY G P PSSRP
Sbjct: 38 PSHHEGYPP---PQPYGGYPPPSSRP 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,702,192
Number of Sequences: 28952
Number of extensions: 270005
Number of successful extensions: 912
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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