Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A05
(928 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35120.1 68415.m04308 glycine cleavage system H protein, mito... 116 2e-26
At2g35370.1 68415.m04336 glycine cleavage system H protein 1, mi... 112 3e-25
At1g32470.1 68414.m04007 glycine cleavage system H protein, mito... 108 6e-24
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 30 1.9
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 30 1.9
At2g32900.1 68415.m04033 centromere/kinetochore protein, putativ... 30 1.9
At5g05020.1 68418.m00533 expressed protein 30 2.5
At5g18870.1 68418.m02242 inosine-uridine preferring nucleoside h... 29 4.4
At2g18120.1 68415.m02109 lateral root primordium (LRP) protein-r... 29 4.4
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 29 4.4
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 28 7.6
>At2g35120.1 68415.m04308 glycine cleavage system H protein,
mitochondrial, putative similar to SP|Q39732 Glycine
cleavage system H protein, mitochondrial precursor
{Flaveria anomala}; contains Pfam profile PF01597:
Glycine cleavage H-protein
Length = 156
Score = 116 bits (279), Expect = 2e-26
Identities = 50/116 (43%), Positives = 77/116 (66%)
Frame = +2
Query: 353 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 532
KY D HEWV ID + T G++++AQ+ LGDVV+ +LPD G + G GA+ESVKA S+
Sbjct: 33 KYADSHEWVKIDGNKATFGITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVESVKATSD 92
Query: 533 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEESRNF 700
I SP+SG V E N+++ + P L+N+S Y++GW+ ++++ E LM ++ F
Sbjct: 93 INSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSDAGEAEKLMDSDKYSKF 148
>At2g35370.1 68415.m04336 glycine cleavage system H protein 1,
mitochondrial (GDCSH) (GCDH) identical to SP|P25855
Glycine cleavage system H protein 1, mitochondrial
precursor {Arabidopsis thaliana}
Length = 165
Score = 112 bits (270), Expect = 3e-25
Identities = 51/124 (41%), Positives = 77/124 (62%)
Frame = +2
Query: 329 YSTGGSSRKYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGAL 508
+ST KY + HEWV + + T+G++ +AQ+ LG+VVF +LP+ T + GA+
Sbjct: 34 FSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAV 93
Query: 509 ESVKAASEIYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEE 688
ESVKA SEI SP+SG + E NK + + P LIN+S Y+ GW+ ++K +E+ LM +E
Sbjct: 94 ESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKE 153
Query: 689 SRNF 700
F
Sbjct: 154 YTKF 157
>At1g32470.1 68414.m04007 glycine cleavage system H protein,
mitochondrial, putative similar to SP|P25855 Glycine
cleavage system H protein 1, mitochondrial precursor
{Arabidopsis thaliana}; contains Pfam profile PF01597:
Glycine cleavage H-protein
Length = 166
Score = 108 bits (259), Expect = 6e-24
Identities = 48/116 (41%), Positives = 74/116 (63%)
Frame = +2
Query: 353 KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTDLKAGDECGALESVKAASE 532
KY + HEWV + + T+G++++AQ+ LG+VVF +LP+ + + GA+ESVKA SE
Sbjct: 43 KYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSE 102
Query: 533 IYSPLSGTVTEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEINDLMTEEESRNF 700
I SP+SG V E N + + P LIN+S Y+ GW+ ++K +E+ LM +E F
Sbjct: 103 ILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKF 158
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 251 QIVKTYKLRHHLQSNIRQTY--CMLCLKYSTGGSSR--KYTDRHEWVTIDKDIGTVGVSE 418
Q K + L H Q + R+ + C + G S K +DR W+ + G+V +S
Sbjct: 739 QKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSR 798
Query: 419 YAQE 430
YA E
Sbjct: 799 YASE 802
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 251 QIVKTYKLRHHLQSNIRQTY--CMLCLKYSTGGSSR--KYTDRHEWVTIDKDIGTVGVSE 418
Q K + L H Q + R+ + C + G S K +DR W+ + G+V +S
Sbjct: 739 QKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSR 798
Query: 419 YAQE 430
YA E
Sbjct: 799 YASE 802
>At2g32900.1 68415.m04033 centromere/kinetochore protein, putative
(ZW10) identical to centromere/kinetochore protein zw10
homolog SP:O48626 from [Arabidopsis thaliana]
Length = 742
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 506 LESVKAASEIYSPLSGTV-----TEKNKDVEDKPALINTSCYDKGWLFRLKIIKQSEIND 670
L+SV++A E PL + T K ++ D P + TS ++ G LFR + +E+ D
Sbjct: 660 LDSVRSADETSRPLDDIIPSLRKTRKLAELLDMPLMSITSAWESGELFRCNFTR-TEVQD 718
Query: 671 LM 676
+
Sbjct: 719 FI 720
>At5g05020.1 68418.m00533 expressed protein
Length = 154
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -2
Query: 654 CLIIFNLNNHPLS*QDVFISAGLSSTSLFFSVTVPDNGE*ISLAAF-TLSKAPHSSPALR 478
C I + N P+S V++ S+T++ +VT PD + L+A T+ +P S L
Sbjct: 49 CNISGDPNAPPVSGAPVYLKCDGSNTTIADAVTKPDGTFRVLLSAVQTVLISPSSCYLLA 108
Query: 477 SVPGSGSCA 451
++PG G+C+
Sbjct: 109 NLPG-GNCS 116
>At5g18870.1 68418.m02242 inosine-uridine preferring nucleoside
hydrolase-related
Length = 258
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 399 PISLSIV-THSCLSVYFLDDPPVLYFKHNIQYVCLMFDCK*CLN 271
PIS+ ++ +H+ L+++ + +P + KHNIQ++ +M C N
Sbjct: 179 PISIFVIGSHTNLALFMMSNP---HLKHNIQHIYVMGGSVRCQN 219
>At2g18120.1 68415.m02109 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 222
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 335 TGGSSR--KYTDRHEWVTIDKDIGTVGVSEYAQESLGDVVFAQLPDPGTD 478
TGGS R KY D ++ T+D +G + + E D +F + GTD
Sbjct: 128 TGGSGRVGKYRDINQHATLDSSGLEMGETRFPDEVSSDALFRCVRMSGTD 177
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 492 SPALRSVPGSGSCAKTTSPRDSWA 421
S LR +PG+ +CA+ +P WA
Sbjct: 470 STILRGLPGNNACAECNAPEPDWA 493
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 483 LRSVPGSGSCAKTTSPRDSWA 421
LR +PG+ +CA+ +P WA
Sbjct: 473 LREIPGNNTCAECNAPDPDWA 493
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,260,465
Number of Sequences: 28952
Number of extensions: 327117
Number of successful extensions: 781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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