Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A13
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 175 2e-44
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 58 6e-09
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 58 6e-09
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 58 6e-09
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 56 2e-08
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 54 1e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 53 2e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 51 6e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 51 6e-07
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 50 2e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 8e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 8e-06
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 48 8e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 47 1e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 47 1e-05
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 46 2e-05
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 46 2e-05
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 46 2e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 46 2e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 45 4e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 45 6e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 45 6e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 44 7e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 7e-05
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 44 1e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 44 1e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 44 1e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 43 2e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 43 2e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 43 2e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 43 2e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 43 2e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 43 2e-04
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 43 2e-04
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 43 2e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 2e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 43 2e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 43 2e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 43 2e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 43 2e-04
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 42 3e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 4e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 4e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 41 7e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 7e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 41 7e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 41 9e-04
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 40 0.001
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 40 0.001
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 40 0.001
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 40 0.001
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 40 0.001
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 40 0.002
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.002
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 40 0.002
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 40 0.002
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.002
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 40 0.002
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.004
At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.004
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 39 0.004
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 39 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.005
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 38 0.005
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 38 0.005
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 38 0.005
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.005
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 38 0.005
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.006
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.006
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 38 0.006
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.008
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 38 0.008
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 37 0.011
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 37 0.015
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 37 0.015
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 36 0.019
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.019
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 36 0.025
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.025
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 36 0.034
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 36 0.034
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 36 0.034
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.034
At5g24440.1 68418.m02880 RNA-binding protein, putative 35 0.059
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.059
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 34 0.078
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 34 0.078
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 34 0.078
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 34 0.078
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 34 0.078
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 34 0.10
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.10
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.10
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.14
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.14
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 33 0.14
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.18
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.18
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.18
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.24
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.24
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.24
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.24
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.24
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 33 0.24
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.24
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.31
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.31
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.31
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.31
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.31
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.55
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.55
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 31 0.55
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 31 0.55
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 31 0.55
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 31 0.73
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 0.96
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 0.96
At5g54020.1 68418.m06719 expressed protein 30 1.3
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.3
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.3
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 30 1.3
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 30 1.7
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 30 1.7
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 30 1.7
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 30 1.7
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.7
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 30 1.7
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 1.7
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 2.2
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 2.2
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 29 2.2
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 2.2
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 2.2
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 29 2.2
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 29 2.2
At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containi... 29 2.9
At5g49650.2 68418.m06145 xylulose kinase, putative similar to D-... 29 2.9
At5g49650.1 68418.m06146 xylulose kinase, putative similar to D-... 29 2.9
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 29 3.9
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 3.9
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 29 3.9
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 3.9
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 5.1
At4g30870.1 68417.m04383 repair endonuclease family protein cont... 28 5.1
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 28 5.1
At1g62400.1 68414.m07040 protein kinase, putative similar to pro... 28 5.1
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 6.8
At5g57670.1 68418.m07207 protein kinase family protein contains ... 28 6.8
At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containi... 28 6.8
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 28 6.8
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 6.8
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 8.9
At5g06050.1 68418.m00670 dehydration-responsive protein-related ... 27 8.9
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 27 8.9
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 27 8.9
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 27 8.9
At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi... 27 8.9
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 8.9
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 175 bits (427), Expect = 2e-44
Identities = 75/119 (63%), Positives = 103/119 (86%)
Frame = +3
Query: 141 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 320
++S+YRD+ F G++ E ++ L+AS+T+YIGN+SFYTTEEQ+YEL+SR G+I+++IMGLDK
Sbjct: 10 KLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDK 69
Query: 321 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 497
KTPCGFCFV +Y+RED E+ ++YI+GT LDDR IR D+D GF EGRQ+GRG++GGQV
Sbjct: 70 NTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQV 128
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/76 (32%), Positives = 48/76 (63%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
SSTL++ +SF +TEE + + +S+ G + +V + +DK + P GF +V + ++E+AE +
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 390 RYINGTRLDDRIIRCD 437
+N +D R++ D
Sbjct: 80 LELNAQLVDGRVVILD 95
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/87 (28%), Positives = 50/87 (57%)
Frame = +3
Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 350
KG+ S +K ++ S L++ +LS E + E++ G++ V + +D+ P G +
Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143
Query: 351 VEYYAREDAENCMRYINGTRLDDRIIR 431
VE+ AR DAE Y++G ++D ++++
Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/87 (28%), Positives = 50/87 (57%)
Frame = +3
Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 350
KG+ S +K ++ S L++ +LS E + E++ G++ V + +D+ P G +
Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143
Query: 351 VEYYAREDAENCMRYINGTRLDDRIIR 431
VE+ AR DAE Y++G ++D ++++
Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVK 170
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/77 (33%), Positives = 45/77 (58%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
+S L+IG LSF TTE+ + E +S+CG + + +D+ GF FV + + ++A+ +
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 390 RYINGTRLDDRIIRCDW 440
NG +L+ R I D+
Sbjct: 93 MEFNGQQLNGRTIFVDY 109
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 53.6 bits (123), Expect = 1e-07
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Frame = +3
Query: 126 MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI 305
M + E Q G S EK S ++Y+GN+ + T E++ + + CG + RV
Sbjct: 74 MQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVT 133
Query: 306 MGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG-RQY-GRG 479
+ DK+ + P GF +VE+ E +N + +N + L R I+ + G RQ+ GRG
Sbjct: 134 ILTDKFGQ-PKGFAYVEFVEVEAVQNSL-ILNESELHGRQIKVSAKRTNVPGMRQFRGRG 191
Query: 480 K 482
+
Sbjct: 192 R 192
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
LY+ LSF TTE+ + + + + G++ + M +DK P GF F+ Y E+A ++ +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 399 NGTRLDDRII 428
+G LD R+I
Sbjct: 139 HGKFLDGRVI 148
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+++ + NLS T E + EL+ G + RV + +D+ GF FV + +REDA+ +
Sbjct: 213 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 272
Query: 393 YINGTRLDDRIIRCDW 440
+NG D+ I+R +W
Sbjct: 273 KLNGYGYDNLILRVEW 288
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 51.2 bits (117), Expect = 6e-07
Identities = 30/108 (27%), Positives = 54/108 (50%)
Frame = +3
Query: 114 SYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI 293
S++S+N E S +D + + E + L+I LSFYT+E+ + + G++
Sbjct: 252 SFESLNKDYEGDSTQDSR---DQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGEL 308
Query: 294 RRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
V + +DK K G+ F+EY E A ++ +NG ++ +I D
Sbjct: 309 VEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVD 356
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/91 (28%), Positives = 48/91 (52%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
A +LY+G+L F T+ Q+Y+ ++ + V + D T G+ +V Y +DAE
Sbjct: 44 ALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKA 103
Query: 387 MRYINGTRLDDRIIRCDWDAGFIEGRQYGRG 479
M+ +N + L+ ++IR + + R+ G G
Sbjct: 104 MQKLNYSYLNGKMIRITYSSRDSSARRSGVG 134
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/70 (30%), Positives = 38/70 (54%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+ +Y+ NLS TT++++ + + G I ++ D K+ C F FV + EDA +
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRC-FGFVNFENPEDAARAVE 283
Query: 393 YINGTRLDDR 422
+NG + DD+
Sbjct: 284 ALNGKKFDDK 293
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++ NL + ++E +S CG I + D ++ G+ FV++ + A+N + +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSR-GYGFVQFDTEDSAKNAIEKL 194
Query: 399 NGTRLDDRII 428
NG L+D+ I
Sbjct: 195 NGKVLNDKQI 204
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
LY+ NL T+E++ EL++ G I + D T G FV + A +A + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 399 NG 404
NG
Sbjct: 389 NG 390
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/79 (35%), Positives = 41/79 (51%)
Frame = +3
Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
++ +T+YI NL T E I ELY+ G+++R + DK + P G V Y R DA
Sbjct: 103 VEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGR-PSGSAEVVYMRRSDAI 161
Query: 381 NCMRYINGTRLDDRIIRCD 437
MR N LD R ++ +
Sbjct: 162 QAMRKYNNVLLDGRPMKLE 180
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/95 (25%), Positives = 51/95 (53%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
+SS L+IG +++ E+ + E +++ G++ + LD+ GF FV + + E A +
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 387 MRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
++ ++G L R+++ ++ G +G G GG
Sbjct: 98 IQALDGRDLHGRVVKVNYANDRTSGGGFGGGGYGG 132
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+++ + NLS T + EL+ G + R + +D+ GF FV + +REDA+ +
Sbjct: 174 NSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAIN 233
Query: 393 YINGTRLDDRIIRCDW 440
+NG D+ I+R +W
Sbjct: 234 KLNGYGYDNLILRVEW 249
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/93 (25%), Positives = 48/93 (51%)
Frame = +3
Query: 144 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 323
+S R + SRS ++ +TLY+ LS T++ + +++ G + + ++
Sbjct: 48 VSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPR 107
Query: 324 KKTPCGFCFVEYYAREDAENCMRYINGTRLDDR 422
+ GF FV + +DAE C++Y+N + L+ R
Sbjct: 108 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 47.2 bits (107), Expect = 1e-05
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Frame = +3
Query: 75 IIEK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGS--------RSEQEKLLKASSTLYIG 230
+I K + Y +D ++++ I S +H G + Q + + +++G
Sbjct: 90 LIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVG 149
Query: 231 NLSFYTTEEQIYE---LYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
+LS T+ +Y+ ++S C D R +M K ++ GF FV + ++DA+ + +N
Sbjct: 150 DLSPEVTDATLYQSFSVFSSCSDAR--VMWDQKTGRSR-GFGFVSFRNQQDAQTAINEMN 206
Query: 402 GTRLDDRIIRCDW 440
G L R IRC+W
Sbjct: 207 GKWLSSRQIRCNW 219
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSR--CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
+T+Y+GNL+ T+ ++ + G I V + DK GF FV Y +A
Sbjct: 265 TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK------GFGFVRYNTHPEAALA 318
Query: 387 MRYIN-GTRLDDRIIRCDW 440
++ N L +R I+C W
Sbjct: 319 IQMGNTQPYLFNRQIKCSW 337
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
++ +Y+GNLS TT++ + E +S G++ I+ D+Y GF FV Y + +AE +
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 390 RYINGTRLDDR 422
++G L+ R
Sbjct: 62 SGMDGKELNGR 72
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +3
Query: 141 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 320
E+ + +D + E ++ + A S +Y+GN+ + T E++ + CG + RV + +DK
Sbjct: 66 EMGATQDPASMAANQEGKEEVDARS-VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124
Query: 321 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG-RQYGRGK 482
+ + P GF +VE+ E + ++ +N + L R ++ + G +QY G+
Sbjct: 125 FGQ-PKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVSPKRTNVPGMKQYHPGR 177
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +3
Query: 141 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 320
E+ + +D + E ++ + A S +Y+GN+ + T E++ + CG + RV + +DK
Sbjct: 66 EMGATQDPASMAANQEGKEEVDARS-VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124
Query: 321 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG-RQYGRGK 482
+ + P GF +VE+ E + ++ +N + L R ++ + G +QY G+
Sbjct: 125 FGQ-PKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVSPKRTNVPGMKQYHPGR 177
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +3
Query: 132 SSIEISSYRDQHFKGSRSEQEKLLKASS-TLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 308
+S++ S ++ G+ S L ASS T+++ N+ F T++ + +++ G++ + +
Sbjct: 488 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 547
Query: 309 GLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIR 431
D P G ++E+ +E AEN + ++GT RI++
Sbjct: 548 VTDPATGQPSGSAYIEFTRKEAAENALS-LDGTSFMSRILK 587
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/73 (28%), Positives = 41/73 (56%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+T+Y+G L +EE ++EL+ + G + V + D+ + F+EY + EDA+ ++
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 393 YINGTRLDDRIIR 431
+N +L + IR
Sbjct: 85 VLNMIKLHGKPIR 97
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Frame = +3
Query: 150 SYRDQHFKGSRSEQEKL-LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYK 326
S H S S + + +SS +++G +S+ T E + E +S+ G++ + +D+
Sbjct: 12 SQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRET 71
Query: 327 KTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW----DAGFIEGRQYGRGKTGG 491
GF FV + + E+A N M+ ++G L R IR ++ +GF GR +G G GG
Sbjct: 72 GRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSGF-GGRGFG-GPGGG 127
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +3
Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
L+ TL+IG+L ++ E + +S+ G++ V + +K P G+ F+E+ + AE
Sbjct: 20 LEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAE 79
Query: 381 NCMRYINGTRL--DDRIIRCDWDAGFIEGRQYGRG 479
++ NGT++ + R +W A F G++ G
Sbjct: 80 RTLQTYNGTQMPGTELTFRLNW-ASFGSGQKVDAG 113
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +3
Query: 189 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 368
+EK A++T+ + L + T Q+ E +S G +RR + +K GF FV++ +
Sbjct: 12 EEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQ 71
Query: 369 EDAENCMRYINGTRLDDRII 428
ED + NG+ + R I
Sbjct: 72 EDVNRAIELKNGSTVGGRRI 91
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L I NL F I ++S G + V + + P GF FV++ ++DA N ++
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 399 NGTRLDDRIIRCDW 440
NG R I DW
Sbjct: 393 NGHMFGKRPIAVDW 406
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 44.8 bits (101), Expect = 6e-05
Identities = 36/131 (27%), Positives = 61/131 (46%)
Frame = +3
Query: 102 KMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSR 281
K +Y N S ++ GS S+ E +ST+++G L TEE + + +S
Sbjct: 293 KRAAAYGQQNGSQALTLAGGHGGNGSMSDGES---NNSTIFVGGLDADVTEEDLMQPFSD 349
Query: 282 CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG 461
G++ V + + K CGF V++ R+ AE + +NGT + +R W G
Sbjct: 350 FGEVVSVKIPVGK----GCGF--VQFANRQSAEEAIGNLNGTVIGKNTVRLSW--GRSPN 401
Query: 462 RQYGRGKTGGQ 494
+Q+ R +G Q
Sbjct: 402 KQW-RSDSGNQ 411
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +3
Query: 144 ISSYRDQHFKGSRSE-QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 320
+S R + SRS + ++ +TLY+ LS T++ + +++ G + + ++
Sbjct: 48 VSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEP 107
Query: 321 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDR 422
+ GF FV + +DAE C++Y+N + L+ R
Sbjct: 108 RTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 7e-05
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Frame = +3
Query: 51 VDSCILLLIIEK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGS--------RSEQEKLLK 206
V+SC L I K + Y +D ++ + I S +H G S Q +
Sbjct: 80 VESCKL---IRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTS 136
Query: 207 ASSTLYIGNLSFYTTEEQIY---ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 377
+ +++G+LS T+ ++ +Y C D R +M K ++ GF FV + ++DA
Sbjct: 137 SHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDAR--VMWDQKTGRSR-GFGFVSFRNQQDA 193
Query: 378 ENCMRYINGTRLDDRIIRCDW 440
+ + I G L R IRC+W
Sbjct: 194 QTAIDEITGKWLGSRQIRCNW 214
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +3
Query: 189 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 368
Q++ +TLY+G L+ E ++ + GDI+ V LD+ + F FV + R
Sbjct: 5 QQQQAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLER 64
Query: 369 EDAENCMRYINGTRLDDRIIRCDW 440
EDA M ++G L R++ ++
Sbjct: 65 EDASAAMDNMDGAELYGRVLTVNY 88
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/89 (24%), Positives = 48/89 (53%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
++++GN+ + T E++ + + CG + RV + DK+ + P GF +VE+ E + ++
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQ-PKGFAYVEFVEVEAVQEALQ- 150
Query: 396 INGTRLDDRIIRCDWDAGFIEGRQYGRGK 482
+N + L R ++ + G + RG+
Sbjct: 151 LNESELHGRQLKVLQKRTNVPGLKQFRGR 179
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/81 (29%), Positives = 46/81 (56%)
Frame = +3
Query: 162 QHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 341
+ FK EQ+ + K S+ +Y+ N++ TEE++ + +S+CG I + D+ K+ G
Sbjct: 288 EQFKEKHEEQKMIAKVSN-IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK-G 345
Query: 342 FCFVEYYAREDAENCMRYING 404
F FV + E+A + ++ +G
Sbjct: 346 FGFVCFSTPEEAIDAVKTFHG 366
Score = 34.7 bits (76), Expect = 0.059
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 180 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC-GFCFVE 356
++++ K + + LY+ NL +E+ + E ++ G I V + + K + C G+ FV
Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVN 247
Query: 357 YYAREDAENCMRYINGTRLDDRII 428
+ EDA +NGT+ + +
Sbjct: 248 FDNPEDARRAAETVNGTKFGSKCL 271
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Frame = +3
Query: 36 SSQNLVDSCILLLIIEK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGSRSE--------Q 191
+S ++SC L I K + Y +D +S+ I + +H G + Q
Sbjct: 84 ASTGPIESCKL---IRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ 140
Query: 192 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 371
+ + +++G+LS T+ +++ +S + D+ GF FV + ++
Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
Query: 372 DAENCMRYINGTRLDDRIIRCDW---DAGFIEGRQYGRGKT 485
DA+ + +NG + R IRC+W A F E + GK+
Sbjct: 201 DAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKS 241
Score = 33.9 bits (74), Expect = 0.10
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSR--CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
+T+Y+GNLS T+ ++ L+ G I V + DK GF FV Y ++A
Sbjct: 269 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK------GFGFVRYNTHDEAALA 322
Query: 387 MRYINGTR-LDDRIIRCDW 440
++ N L R IRC W
Sbjct: 323 IQMGNAQPFLFSRQIRCSW 341
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/72 (26%), Positives = 41/72 (56%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
++LYI NL +EE ++ ++S G + R ++ D ++ GF F+E+ + + A M
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAML 75
Query: 393 YINGTRLDDRII 428
+++G + +I+
Sbjct: 76 HMDGRLIGQKIL 87
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +3
Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKT-PCGFCFVEYY 362
E+E++ L++G+L+ TE+++ E++ + G + V + D+Y+++ CG FV+Y
Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCG--FVKYS 259
Query: 363 AREDAENCMRYINGT 407
++E A + +NGT
Sbjct: 260 SKETAMAAIDGLNGT 274
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++G++ TEE+I + + G++ V + DK G CFV+Y +DA+ +R +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 399 N 401
+
Sbjct: 182 H 182
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +3
Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKT-PCGFCFVEYY 362
E+E++ L++G+L+ TE+++ E++ + G + V + D+Y+++ CG FV+Y
Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCG--FVKYS 259
Query: 363 AREDAENCMRYINGT 407
++E A + +NGT
Sbjct: 260 SKETAMAAIDGLNGT 274
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++G++ TEE+I + + G++ V + DK G CFV+Y +DA+ +R +
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 399 N 401
+
Sbjct: 182 H 182
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/97 (25%), Positives = 47/97 (48%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DA++
Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADD 60
Query: 384 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 494
+ +G D +R + G RG G+
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGR 97
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/97 (25%), Positives = 47/97 (48%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DA++
Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADD 60
Query: 384 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 494
+ +G D +R + G RG G+
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGR 97
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+Y+ N+ +++ +S+ G+I +GLDKY P GFC Y + E A+ +
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 399 NGTRLDDRIIRC 434
+ T + I+ C
Sbjct: 307 HKT-FEGHILHC 317
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+Y+ N+ +++ +S+ G+I +GLDKY P GFC Y + E A+ +
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 399 NGTRLDDRIIRC 434
+ T + I+ C
Sbjct: 307 HKT-FEGHILHC 317
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+Y+ N+ +++ +S+ G+I +GLDKY P GFC Y + E A+ +
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306
Query: 399 NGTRLDDRIIRC 434
+ T + I+ C
Sbjct: 307 HKT-FEGHILHC 317
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+++GN+ + TEEQ+ E+ G + + D+ P G+ F EY E A + R +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 399 NGTRLDDRIIRCDW---DAGFIEGRQYGRGKTG 488
++ R +R D+ D G + R +G G
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQSQGGPG 103
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++GNLS+ T E + + CGD+ + D G+ FV Y ++ + E + +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 399 NGTRLDDRIIRCDWDAG 449
+G L+ R IR + G
Sbjct: 239 DGFELEGRAIRVNLAQG 255
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/106 (28%), Positives = 54/106 (50%)
Frame = +3
Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
+RSE + + ++T+++G L T+E + + +S G+I V + + K CGF V+
Sbjct: 297 TRSEGDTI---NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK----GCGF--VQ 347
Query: 357 YYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 494
+ R +AE + +NGT + + +R W G + R K G Q
Sbjct: 348 FVNRPNAEEALEKLNGTVIGKQTVRLSW--GRNPANKQPRDKYGNQ 391
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = +3
Query: 165 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGL--DKYKKTPC 338
H Q + T+++G+L + E + ++ + V + + +K+ +
Sbjct: 87 HQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSE 146
Query: 339 GFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEGRQ 467
G+ FVE+ + + A+ ++ NG + D+ R +W A F G +
Sbjct: 147 GYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNW-ASFSTGEK 190
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = +3
Query: 189 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 368
Q L S +++G LS T E + E + G I ++ LD+ GF FV Y +
Sbjct: 28 QGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSI 87
Query: 369 EDAENCMRYINGTRLDDRII 428
E A N M+ + LD RII
Sbjct: 88 EVANNAMQAMQNKELDGRII 107
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60
Query: 384 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
+ +G D +R + G RG G
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60
Query: 384 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
+ +G D +R + G RG G
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60
Query: 384 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
+ +G D +R + G RG G
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/79 (27%), Positives = 43/79 (54%)
Frame = +3
Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
++ + LYI NL + + E I EL+S GD++R + D+ ++ G V + R DA
Sbjct: 104 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSK-GTAEVVFSRRGDAL 162
Query: 381 NCMRYINGTRLDDRIIRCD 437
++ N +LD ++++ +
Sbjct: 163 AAVKRYNNVQLDGKLMKIE 181
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/88 (27%), Positives = 43/88 (48%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
+ + +Y+GNLS+ + + L+S G + + D+ GF FV Y + ++ +N
Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
Query: 387 MRYINGTRLDDRIIRCDWDAGFIEGRQY 470
++ ++G LD R IR RQY
Sbjct: 262 IKSLDGADLDGRQIRVSEAEARPPRRQY 289
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
++T+++G L T++++ ++ + G++ V + K CGF V+Y + AE+ +
Sbjct: 259 NTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKR----CGF--VQYANKASAEHAL 312
Query: 390 RYINGTRLDDRIIRCDW 440
+NGT+L + IR W
Sbjct: 313 SVLNGTQLGGQSIRLSW 329
Score = 34.3 bits (75), Expect = 0.078
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = +3
Query: 162 QHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 341
QH G S+ +L+IG+L + E I ++++ G+ + +K G
Sbjct: 43 QHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEG 102
Query: 342 FCFVEYYAREDAENCMRYINGTRL--DDRIIRCDW-DAGFIEGR 464
+ F+E+ + AE ++ NG + ++ R +W AG E R
Sbjct: 103 YGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKR 146
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
LY+GNL + T ++ +++ G + V + DK GF FV + E+A+ M+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 399 NGTRLDDRIIRCDW 440
N +++ R ++ ++
Sbjct: 178 NSSQIGGRTVKVNF 191
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +3
Query: 246 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 425
T EE I + G+I+ + + LD+ G+ +EY +E+A++ + +NG L +
Sbjct: 106 TQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165
Query: 426 IRCDW--DAGFIEGRQYGR 476
+ DW +G G Y R
Sbjct: 166 VSVDWAFSSGPSGGESYRR 184
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++ NL + TEE++ E +S G I V + LDK K G ++ Y E A M +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322
Query: 399 NGTRLDDRII 428
+ + R++
Sbjct: 323 DNSSFQGRLL 332
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/79 (22%), Positives = 41/79 (51%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
K + L++ N++F T+ ++ +L+S G I+ + + + G+ FVE+ +++A N
Sbjct: 666 KPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQY-AGYAFVEFVTKQEALN 724
Query: 384 CMRYINGTRLDDRIIRCDW 440
+ + T R + +W
Sbjct: 725 AKKALASTHFYGRHLVLEW 743
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI-MGLDKYKKT----PCGFCFVEYYARED 374
S+ L + NLSF TT+E + + +++ +++ + + K+KK G+ FVE+ + E
Sbjct: 568 SNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVET 627
Query: 375 AENCMRYINGTRLD 416
A + R + GT LD
Sbjct: 628 ATSVYRDLQGTVLD 641
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
+A+ +YIGN+ T EQ+ +L G + +V + DKY F F + EDA
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 384 CMRYINGTRLDDRIIR 431
+ +NG ++ R I+
Sbjct: 133 VVEKLNGNTVEGREIK 148
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 41.1 bits (92), Expect = 7e-04
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
++T+++G L T+E + + ++ G+I V + + K CGF V++ R +AE +
Sbjct: 303 NTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK----GCGF--VQFVNRPNAEEAL 356
Query: 390 RYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 494
+NGT + + +R W G + R K G Q
Sbjct: 357 EKLNGTVIGKQTVRLSW--GRNPANKQPRDKYGNQ 389
Score = 32.7 bits (71), Expect = 0.24
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Frame = +3
Query: 165 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI---MGLDKYKKTP 335
H Q + T+++G+L + E + ++ GD R ++ + +K
Sbjct: 85 HQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFAS-GDEREIVSVKVIRNKNNGLS 143
Query: 336 CGFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEGRQ 467
G+ FVE+ + + A+ +R NGT + D+ R +W A F G +
Sbjct: 144 EGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNW-ASFSTGEK 188
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +3
Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
+RS ++LY+ LS TE + + +++ G + V + LD + + GF F+
Sbjct: 33 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFIS 92
Query: 357 YYAREDAENCMRYINGTRLDDRII 428
+ DA C+R ++ + L R+I
Sbjct: 93 MKSVGDANRCIRSLDHSVLQGRVI 116
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +3
Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
+RS ++LY+ LS TE + + +++ G + V + LD + + GF F+
Sbjct: 63 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFIS 122
Query: 357 YYAREDAENCMRYINGTRLDDRII 428
+ DA C+R ++ + L R+I
Sbjct: 123 MKSVGDANRCIRSLDHSVLQGRVI 146
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 40.7 bits (91), Expect = 9e-04
Identities = 29/107 (27%), Positives = 57/107 (53%)
Frame = +3
Query: 174 GSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFV 353
GS+S+ E ++T+++G + +E + + +S+ G++ V + + K CGF V
Sbjct: 311 GSQSDGES---TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK----GCGF--V 361
Query: 354 EYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 494
++ R+ AE+ + +NGT + +R W G +Q+ RG +G Q
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSW--GRSPNKQW-RGDSGQQ 405
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/99 (25%), Positives = 49/99 (49%)
Frame = +3
Query: 141 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 320
++ S R + + RS ++ + LYI NL + E I EL++ G+++R + D+
Sbjct: 64 DMFSDRSEDHRSGRSSAG--IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR 121
Query: 321 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
++ G V Y R DA ++ N +LD + ++ +
Sbjct: 122 SGRSK-GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIE 159
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/99 (25%), Positives = 49/99 (49%)
Frame = +3
Query: 141 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 320
++ S R + + RS ++ + LYI NL + E I EL++ G+++R + D+
Sbjct: 66 DMFSDRSEDHRSGRSSAG--IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR 123
Query: 321 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
++ G V Y R DA ++ N +LD + ++ +
Sbjct: 124 SGRSK-GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIE 161
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/88 (26%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +3
Query: 171 KGSRSEQEKLLKASSTLYIGN--LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF 344
+ S S++ +L+ + + N LS YTT++ + +L++ R+I D+ + P GF
Sbjct: 55 RSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFA---PFARLIK--DQQTQRPKGF 109
Query: 345 CFVEYYAREDAENCMRYINGTRLDDRII 428
F+ + + +DA+ ++ +NG ++ R+I
Sbjct: 110 GFITFESEDDAQKALKALNGKIVNGRLI 137
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/93 (26%), Positives = 48/93 (51%)
Frame = +3
Query: 162 QHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 341
Q+ +G+ E + ++T+++G + TE+ + ++ + G++ V + K CG
Sbjct: 264 QNTQGNSGESDP---TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR----CG 316
Query: 342 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 440
F V+Y R AE + +NGT+L + IR W
Sbjct: 317 F--VQYANRACAEQALSVLNGTQLGGQSIRLSW 347
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = +3
Query: 156 RDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP 335
+ Q + G S+ +L+IG+L + E + ++ G+ + +K
Sbjct: 61 QQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYS 120
Query: 336 CGFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDW-DAGFIEGRQ 467
G+ F+E+ AE ++ NG + ++ R +W G E RQ
Sbjct: 121 EGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQ 167
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++GNLSF Q+ +L+ G++ V + DK GF FV + E +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 399 NGTRLDDRIIR 431
NG + R +R
Sbjct: 161 NGYEFEGRPLR 171
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
+ + LY+GNLS+ + + L++ G + + D+ GF FV + ++ +
Sbjct: 247 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 306
Query: 387 MRYINGTRLDDRIIR 431
+ +NG LD R IR
Sbjct: 307 INSLNGADLDGRQIR 321
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++GNLSF Q+ +L+ G++ V + DK GF FV + E +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 399 NGTRLDDRIIR 431
NG + R +R
Sbjct: 161 NGYEFEGRPLR 171
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
+ + LY+GNLS+ + + L++ G + + D+ GF FV + ++ +
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 387 MRYINGTRLDDRIIR 431
+ +NG LD R IR
Sbjct: 315 INSLNGADLDGRQIR 329
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 40.3 bits (90), Expect = 0.001
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Frame = +3
Query: 36 SSQNLVDSCILLLIIEK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGSRSE--------Q 191
+S ++SC L I K + Y +D +S+ I + +H G + Q
Sbjct: 84 ASTGPIESCKL---IRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ 140
Query: 192 EKLLKASSTLYIGNLSFYTTEEQIYELYSR---CGDIRRVIMGL-DKYKKTPCGFCFVEY 359
+ + +++G+LS T+ +++ +S C R + D+ GF FV +
Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Query: 360 YAREDAENCMRYINGTRLDDRIIRCDW---DAGFIEGRQYGRGKT 485
++DA+ + +NG + R IRC+W A F E + GK+
Sbjct: 201 RNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKS 245
Score = 33.9 bits (74), Expect = 0.10
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSR--CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
+T+Y+GNLS T+ ++ L+ G I V + DK GF FV Y ++A
Sbjct: 273 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK------GFGFVRYNTHDEAALA 326
Query: 387 MRYINGTR-LDDRIIRCDW 440
++ N L R IRC W
Sbjct: 327 IQMGNAQPFLFSRQIRCSW 345
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
++T+++G L T++ + ++S+ G+I V + K CGF V++ + AE +
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR----CGF--VQFSEKSCAEEAL 313
Query: 390 RYINGTRLDDRIIRCDW 440
R +NG +L +R W
Sbjct: 314 RMLNGVQLGGTTVRLSW 330
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/96 (26%), Positives = 47/96 (48%)
Frame = +3
Query: 150 SYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKK 329
S R + + RS ++ + LYI NL + E I EL++ G+++R + D+ +
Sbjct: 3 SDRSEDHRSGRSSAG--IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 60
Query: 330 TPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
+ G V Y R DA ++ N +LD + ++ +
Sbjct: 61 SK-GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIE 95
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
K S +++G LS T+ + +SR GDI + L++ GF F+ + R +
Sbjct: 4 KEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Query: 384 CMRYINGTRLDDRII---RCDWDAGFIEGRQYG 473
+R ++G DR+I R + G +G +G
Sbjct: 64 SIREMHGRDFGDRVISVNRAEPKLGRDDGESHG 96
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S ++Y+GNL E +I +++ + G I V + L + PC +CFVE+ DAE+ +
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRI--VDIELKVPPRPPC-YCFVEFEHSRDAEDAI 62
Query: 390 RYINGTRLDDRIIRCD 437
+ +G LD +R +
Sbjct: 63 KGRDGYNLDGCRLRVE 78
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+Y+ N+S +++ E +SR G+I +GLDK P GF Y + E A+ +
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEP 288
Query: 399 NGTRLDDRIIRC 434
+ T + ++ C
Sbjct: 289 HKT-FEGHVLHC 299
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +3
Query: 141 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 320
E Y D + S ++ S L I NL + + + R G ++ + + +
Sbjct: 23 ERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNY 82
Query: 321 YKKTPCGFCFVEYYAREDAENCMRYIN 401
Y P GF FV+Y EDA M+ +N
Sbjct: 83 YTGEPRGFGFVKYRYAEDAAEAMKRMN 109
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
++ T+YIGN+ ++ +Y++ + G + + + DK P GF F EY E A+
Sbjct: 5 SNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
Query: 387 MRYING 404
++ +G
Sbjct: 65 VKLFSG 70
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
+L + N+ E++ E + R G +R V + D Y P GF FVE+ DA R
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 396 IN 401
+N
Sbjct: 108 MN 109
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
LY+ L+ TT+ ++ E++SR G I + M LD K G+ FV++ +E A ++ +
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR-GYAFVQFSCKEMALAAIKAL 267
Query: 399 NG 404
NG
Sbjct: 268 NG 269
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/84 (29%), Positives = 39/84 (46%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
++ LY+G LS T + L+SR G +R V M D + FVE+ DA++
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDADDAR 61
Query: 390 RYINGTRLDDRIIRCDWDAGFIEG 461
Y++G D I ++ G G
Sbjct: 62 HYLDGRDFDGSRITVEFSRGAPRG 85
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
++ L++G L ++TT+ +I + S+ G ++ + ++ G+C VE+Y A C
Sbjct: 201 NTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACK 260
Query: 390 RYING 404
+NG
Sbjct: 261 EGMNG 265
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/81 (23%), Positives = 43/81 (53%)
Frame = +3
Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 365
E L + S+L++ S +E ++ +++S G + V + ++ + G+ +V + +
Sbjct: 68 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127
Query: 366 REDAENCMRYINGTRLDDRII 428
+EDA++ + +NG D R I
Sbjct: 128 KEDAQSAVEAMNGKFFDGRFI 148
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 402 GTRLDDRIIRC-DWDAGFIEGRQYGRGKTGG 491
G LD R+I + + G GRG +GG
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGG 99
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 402 GTRLDDRIIRC-DWDAGFIEGRQYGRGKTGG 491
G LD R+I + + G GRG +GG
Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGG 99
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+ +Y+ NL+ TT++ + + G I ++ D K+ GF FV + +DA +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSK-GFGFVNFENADDAARAVE 87
Query: 393 YINGTRLDDR 422
+NG + DD+
Sbjct: 88 SLNGHKFDDK 97
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/102 (24%), Positives = 51/102 (50%)
Frame = +3
Query: 132 SSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMG 311
SS + +YR+ F ++ AS + + NL F T+E+ + +S G+I V +
Sbjct: 14 SSSSLPNYRNLRFPKIKASLFNYPLASKIM-VRNLPFSTSEDFLKREFSAFGEIAEVKLI 72
Query: 312 LDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
D+ K G+ F+++ +++DA + ++ + R+I D
Sbjct: 73 KDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYID 114
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
LYI NL F T E Y+L+ R IR+V +G +K K G FV Y DA+ + ++
Sbjct: 22 LYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTK---GTAFVVYEDIYDAKKAVDHL 78
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +3
Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
+IG L++ T++ + + + + G + + LDK+ GF F+ + ++ + + +N
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 402 GTRLDDRIIRCD 437
G LD R I D
Sbjct: 70 GMDLDGRTITVD 81
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S+ L++G+L+ TTE + EL+ R GDI R+ + + GF F+ Y E+A
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRHVEEAVAAK 70
Query: 390 RYINGTRLD 416
+ G L+
Sbjct: 71 EALQGANLN 79
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
TL++G LS +TTE+ + E+ S+ G I+ + + G+ FVEY ++
Sbjct: 65 TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124
Query: 396 INGTRLDDRIIRCDWD 443
+ + +D R I D++
Sbjct: 125 AHHSLIDGREIIVDYN 140
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 362
T++ ++ TE +YE +SR G +R V + +D+ + G +VE+Y
Sbjct: 183 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFY 231
Score = 35.1 bits (77), Expect = 0.045
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
LY+GNL +E+ + +++ G + V + D+ GF FV++ EDA N +
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCK-GFGFVQFARLEDARNALNLN 345
Query: 399 NGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 497
+ R I+ E + G+ +T G +
Sbjct: 346 GQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDL 378
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 135 SIEISSYRDQHFKGSRSEQEKLLKASST--LYIGNLSFYTTEEQIYELYSRCGDIRRVIM 308
S++ + Q G E S T +++G LS TTEE+ + R G V++
Sbjct: 92 SMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVV 151
Query: 309 GLDKYKKTPCGFCFVEYYAREDAENCMR 392
D P GF FV Y + + E M+
Sbjct: 152 MHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Score = 35.1 bits (77), Expect = 0.045
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR-- 392
L++G ++ T+EE + + +SR G + ++ +K P GF FV + D +R
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 393 -YINGTRLDDR 422
+I G +D R
Sbjct: 68 HFILGKPVDVR 78
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
A LY+GNL F +E Q+ +++ G + V + LD GF F+++ E ++
Sbjct: 263 ADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAA 322
Query: 387 MRYING 404
+NG
Sbjct: 323 QIALNG 328
Score = 34.7 bits (76), Expect = 0.059
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 362
T++ + TE +YE +S+ G +R V + +D+ + G ++E+Y
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 217
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 36.7 bits (81), Expect = 0.015
Identities = 25/84 (29%), Positives = 38/84 (45%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
++ LY+G LS T + L+SR G +R V M D + FVE+ DA++
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDADDAR 61
Query: 390 RYINGTRLDDRIIRCDWDAGFIEG 461
Y++G D I + G G
Sbjct: 62 YYLDGRDFDGSRITVEASRGAPRG 85
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
K S+ +Y+G + F TE + ++S+ G+I V + DK GF F+ Y +
Sbjct: 33 KNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTIL 92
Query: 384 CMRYINGTRLDDRIIRCD 437
+ +NG + R I+ D
Sbjct: 93 AVDNLNGALVLGRTIKVD 110
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 240 FYTTEEQIYELYSRCGDIRR--VIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 413
F E + ++Y++ G I+ ++M +D K G+CF+E+ ++A+N +G +L
Sbjct: 72 FEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 131
Query: 414 D 416
D
Sbjct: 132 D 132
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +3
Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 402 GTRLDDRII 428
G LD R+I
Sbjct: 69 GKELDGRVI 77
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 35.9 bits (79), Expect = 0.025
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = +3
Query: 111 RSY--DSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRC 284
RSY DS S R + ++ ++ S+T+ + LS +TEE +Y++ +
Sbjct: 262 RSYREDSYEGDHWNESERRREYEDRHNQDHFSATPSATVVVKGLSMKSTEEDLYQILAEW 321
Query: 285 GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI--NGTRLDDR 422
G + V + ++ GF F+++ + A M I +G LD R
Sbjct: 322 GPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGR 369
Score = 34.3 bits (75), Expect = 0.078
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L + L EE + +S+ I+ + + DK+ GF FV +Y+ EDA +
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 399 NGTRLD 416
N T L+
Sbjct: 520 NRTALE 525
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/103 (23%), Positives = 44/103 (42%)
Frame = +3
Query: 129 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 308
+S +E+ K ++ S TL+ NLSF + + G++ V
Sbjct: 269 SSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRF 328
Query: 309 GLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
++ + GF VE+ + E+A+ + + +G L R IR D
Sbjct: 329 STNRDDGSFRGFGHVEFASSEEAQKALEF-HGRPLLGREIRLD 370
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
L++G+L ++TT+ ++ + G ++ V +K G+C VE+Y A C +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 399 NGTRLDDR 422
NG + R
Sbjct: 296 NGYPFNGR 303
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 35.5 bits (78), Expect = 0.034
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 171 KGSRSE-QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFC 347
+GSR E Q ++ A+ +Y+GNL + ++ L+S G + + D+ GF
Sbjct: 192 RGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG 251
Query: 348 FVEYYAREDAENCMRYINGTRLDDRIIR 431
FV+ + + ++G L+ R I+
Sbjct: 252 FVQMSNENEVNVAIAALDGQNLEGRAIK 279
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/73 (24%), Positives = 39/73 (53%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+++Y+G L + TEE + ++S G + V + D+ + C + FV + R A++ +
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKC-YGFVTFSNRRSADDAIE 65
Query: 393 YINGTRLDDRIIR 431
++G + R +R
Sbjct: 66 DMDGKSIGGRAVR 78
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 186 EQEKLLKASST--LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
E++K+ AS L+IG +S+ T EE++ E + + GD+ ++ D+ GF F+ +
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 34.7 bits (76), Expect = 0.059
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +3
Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 365
+ E ++K T+Y+ ++ TEEQ+ L+ CG + M D YK F F+E+
Sbjct: 130 QNEDMIKR--TVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGD-YKSI-LRFAFIEFTD 185
Query: 366 REDAENCMRYINGTRLDDRIIR 431
E A + +R +GT IR
Sbjct: 186 AEGARSALRK-SGTMFGSHPIR 206
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 34.7 bits (76), Expect = 0.059
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +3
Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
S + L ++I NL + +YE +S G I + +D ++ G+ FV+
Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK-GYGFVQ 178
Query: 357 YYAREDAENCMRYINGTRLDDR 422
+ E A+ + +NG L+D+
Sbjct: 179 FEKEETAQAAIDKLNGMLLNDK 200
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 34.3 bits (75), Expect = 0.078
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+Y+G L + T +E + + R G+I V + D+ G+ FV + E A +
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
Query: 399 NGTRLDDRIIRC 434
N T ++ RI C
Sbjct: 75 NPT-IEGRITNC 85
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 34.3 bits (75), Expect = 0.078
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 240 FYTTEEQIYELYSRCGDIRR--VIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 413
F E + ++Y++ G I+ + M +D K G+CF+E+ ++A+N +G +L
Sbjct: 71 FEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
Query: 414 D 416
D
Sbjct: 131 D 131
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.3 bits (75), Expect = 0.078
Identities = 16/73 (21%), Positives = 40/73 (54%)
Frame = +3
Query: 186 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 365
E L + S+L++ S +E ++ +++S G + V + ++ + G+ +V + +
Sbjct: 49 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 108
Query: 366 REDAENCMRYING 404
+EDA++ + +NG
Sbjct: 109 KEDAQSAVEAMNG 121
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 34.3 bits (75), Expect = 0.078
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +3
Query: 126 MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI 305
++SS+ + +Y+D E A L++ NLS T +I +++ C D+ V+
Sbjct: 99 LSSSLTLPTYQD-FLPRQEDETPPADFAEEVLFVANLSPQT---KILDIFGFCQDVGEVV 154
Query: 306 MG--LDKYKKTPCGFCFVEYYAREDAENCMRYING 404
+ ++ P G FVE+ + +A+ + NG
Sbjct: 155 SVRLIANHEDKPVGCAFVEFLSANEAKKVLENKNG 189
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 34.3 bits (75), Expect = 0.078
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = +3
Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
++G L++ T E+ I ++ G++ + +D+ GF FV + + + +N
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 402 GTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
G LD R I G G +GG
Sbjct: 107 GQELDGRNITAQARGSGTRGGMVGGYGSGG 136
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
S ++IG L EE + +L G+I V + D+ G+ FV + ++ A+ +
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 393 YINGTRLDDRIIRC 434
++ + IRC
Sbjct: 176 ELHSKEFKGKTIRC 189
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA----ENC 386
LY+ N+ T+ EQ+ EL+ R G++ +++ K K G FV Y R A ++
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFG--FVHYAERSSALKAVKDT 351
Query: 387 MRY-INGTRLD 416
RY +NG L+
Sbjct: 352 ERYEVNGQPLE 362
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +3
Query: 159 DQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 338
D HF + + TL I N+ + +++ +L+ G+IR + ++TP
Sbjct: 252 DIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREI-------RETPN 304
Query: 339 G--FCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
F+EYY DAE ++ +N + + + I+ +
Sbjct: 305 RRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 339
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S TL++ N++ + ++ L+ G+IR + GF + YY A M
Sbjct: 184 SRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSR-----GFVMISYYDIRAAHAAM 238
Query: 390 RYINGTRLDDRII 428
R + T L R +
Sbjct: 239 RALQNTLLRKRTL 251
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +3
Query: 159 DQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 338
D HF + + TL I N+ + +++ +L+ G+IR + ++TP
Sbjct: 265 DIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREI-------RETPN 317
Query: 339 G--FCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
F+EYY DAE ++ +N + + + I+ +
Sbjct: 318 RRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 352
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S TL++ N++ + ++ L+ G+IR + GF + YY A M
Sbjct: 197 SRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSR-----GFVMISYYDIRAAHAAM 251
Query: 390 RYINGTRLDDRII 428
R + T L R +
Sbjct: 252 RALQNTLLRKRTL 264
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+ +Y+ NLS ++E++ +++ G ++ D K+ GF FV + +DA +
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK-GFGFVNFENSDDAARAVD 282
Query: 393 YINGTRLDDR 422
+NG DD+
Sbjct: 283 ALNGKTFDDK 292
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
++I NL + ++E +S G I + +D ++ G+ FV+Y E A+ + +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSK-GYGFVQYDTDEAAQGAIDKL 193
Query: 399 NGTRLDDR 422
NG L+D+
Sbjct: 194 NGMLLNDK 201
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S+ L+IG LS+ T + + + ++ GD+ + +D+ GF FV + A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 390 RYINGTRLDDRIIR 431
++G L+ R IR
Sbjct: 94 SEMDGKELNGRHIR 107
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S+ L+IG LS+ T + + + ++ GD+ + +D+ GF FV + A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 390 RYINGTRLDDRIIR 431
++G L+ R IR
Sbjct: 94 SEMDGKELNGRHIR 107
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 33.5 bits (73), Expect = 0.14
Identities = 25/111 (22%), Positives = 44/111 (39%)
Frame = +3
Query: 102 KMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSR 281
KM ++ + S+ + G +KA LYI NL T+E++ L+
Sbjct: 234 KMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKA---LYIKNLPRDITQERLKALFEH 290
Query: 282 CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 434
G I +V++ K K + FV Y R ++ +D ++ C
Sbjct: 291 HGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDC 341
Score = 27.5 bits (58), Expect = 8.9
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Frame = +3
Query: 144 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 323
I + + F+G R + +A L++GN+ E I + +R G +++ L K
Sbjct: 150 IDTLNNTDFRGKRIKCSTT-QAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVE-LPKE 207
Query: 324 KKTPC---GFCFVEYYAREDAENCMRYINGT--RLDDRIIRCDW 440
+ GF F+EYY AE + ++ +LDD W
Sbjct: 208 PQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSW 251
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 192 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 371
E+ TL++ NLS T I + + ++ RV + + ++ G FVE+ +
Sbjct: 482 EEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRL-IVNHRGEHVGCGFVEFASVN 540
Query: 372 DAENCMRYINGTRLDDRIIRCD 437
+A+ ++ +NG L R I D
Sbjct: 541 EAQKALQKMNGENLRSREIFLD 562
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
L++G + + TE Q+ L+ + V + +K + P G CF+ REDA+
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDAD 67
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/75 (20%), Positives = 36/75 (48%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
A + L+I N+ ++++ + G + + +DK F F+ Y ++ A+N
Sbjct: 337 AGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNA 396
Query: 387 MRYINGTRLDDRIIR 431
+ +NG +L + ++
Sbjct: 397 INTMNGCQLSGKKLK 411
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
L++G + + TE Q+ L+ + V + +K + P G CF+ REDA+
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDAD 67
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/75 (20%), Positives = 36/75 (48%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
A + L+I N+ ++++ + G + + +DK F F+ Y ++ A+N
Sbjct: 328 AGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNA 387
Query: 387 MRYINGTRLDDRIIR 431
+ +NG +L + ++
Sbjct: 388 INTMNGCQLSGKKLK 402
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 350
K S +++ + +YIGNL++ TTE I +L+S C I V +G +K G+
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAH 306
Query: 351 VEY 359
V++
Sbjct: 307 VDF 309
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
LY+G + + +TE++I + CG I +V + G F+ + + A+ + +
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY----YAREDAENC 386
+++G L++ T +E +Y+ + + GDI ++ DK + G+ FV + A E+
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDS 78
Query: 387 MRYINGTR 410
ING R
Sbjct: 79 TPIINGRR 86
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 129 NSSIE-ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI 305
+S +E + + + + K ++ + S TL+ GNLS+ I + G++ V
Sbjct: 355 DSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEV--VD 412
Query: 306 MGLDKYKKTPC-GFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 437
+ L + G+ +E+ + E+A+ + +NG L R +R D
Sbjct: 413 VRLSSFDDGSFKGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLD 456
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIY-EL---YSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
S T+Y+ S E++I EL +S+CG++ RV + D+ GF +++
Sbjct: 478 SRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
S LY+ NLS E ++ E++ G I + + ++ GF FV + E+++ R
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK-GFGFVCFSNCEESKQAKR 362
Query: 393 YINGTRLDDRII 428
Y+NG +D + I
Sbjct: 363 YLNGFLVDGKPI 374
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 180 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
++E+ + L++ NL + + I EL+ +CG + V + K K GF FV
Sbjct: 84 KTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNR-GFAFVTM 142
Query: 360 YAREDAENCMRYINGTRLDDRII 428
+ E+A+ + + ++ RII
Sbjct: 143 ASGEEAQAAIDKFDTFQVSGRII 165
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRC--GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
LY+ NL++ + EL++ + ++ D ++ G+ FV + RE+AEN +
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSS-GYGFVSFATREEAENAIT 254
Query: 393 YINGTRLDDRII 428
+NG + R I
Sbjct: 255 KLNGKEIMGRPI 266
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 32.7 bits (71), Expect = 0.24
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Frame = +3
Query: 165 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI---MGLDKYKKTP 335
H Q + T+++G+L + E + ++ GD R ++ + +K
Sbjct: 85 HQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFAS-GDEREIVSVKVIRNKNNGLS 143
Query: 336 CGFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEGRQ 467
G+ FVE+ + + A+ +R NGT + D+ R +W A F G +
Sbjct: 144 EGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNW-ASFSTGEK 188
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = +3
Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
S + L ++I NL + ++E +S G I + +D ++ G+ FV+
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK-GYGFVQ 182
Query: 357 YYAREDAENCMRYINGTRLDDR 422
+ E A+ + +NG ++D+
Sbjct: 183 FEKEESAQAAIDKLNGMLMNDK 204
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
L+IG +S+ T EE++ + +S GD+ ++ D+ GF F+ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
+++G L TEE+ + + G I V++ D + P GF F+ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
L+IG +S+ T EE++ + +S GD+ ++ D+ GF F+ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
+++G L TEE+ + + G I V++ D + P GF F+ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
L+IG +S+ T EE++ + +S GD+ ++ D+ GF F+ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
+++G L TEE+ + + G I V++ D + P GF F+ +
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.31
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Frame = +3
Query: 150 SYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKK 329
S R + SRS + +++G L T+E+ + + G + V + D+
Sbjct: 89 SGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATN 148
Query: 330 TPCGFCFVEYYAREDAENCMRY----INGTRLD-DRIIRCDWDAGFIEGRQYGRGKTGG 491
P GF FV + + + ++ + ++G +++ R + D + G GR G G +GG
Sbjct: 149 RPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGG-GGRSMGGGGSGG 206
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+ L++ L+ T +E ++ ++SR G + + D + F+E+ +E E
Sbjct: 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYF 302
Query: 393 YINGTRLDDRIIRCDW 440
++ +DDR I D+
Sbjct: 303 KMDNALIDDRRIHVDF 318
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+ LYIG L ++ + L+S G+I + D+ G+ FV+Y + A ++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 393 YINGTRLDDRII 428
+NG R + R +
Sbjct: 540 AMNGYRFEGRTL 551
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+ LYIG L ++ + L+S G+I + D+ G+ FV+Y + A ++
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 393 YINGTRLDDRII 428
+NG R + R +
Sbjct: 540 AMNGYRFEGRTL 551
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
L+I L+ TT E + L+S GD+ I+ LDK G+ FV +
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
+Y+ N+ F +++ + GD+ +G DK GF Y E A+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
L+I L+ TT E + L+S GD+ I+ LDK G+ FV +
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
+Y+ N+ F +++ + GD+ +G DK GF Y E A+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = +3
Query: 156 RDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP 335
R + + S +++E +++ T+Y+ +L TEEQ+ L+ CG + V + +
Sbjct: 156 RRMNARTSMAQREDVIRR--TVYVSDLDQQVTEEQLAGLFVSCGQV--VDCRICGDPNSV 211
Query: 336 CGFCFVEYYAREDAENCMRYINGTRL 413
F F+E+ E A + ++GT L
Sbjct: 212 LRFAFIEFTDEEGAMTALN-LSGTML 236
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +3
Query: 213 STLYIGNL-SFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S + + NL S + TEE++ +++SR G+I V + K+ F ++ + ++A++ +
Sbjct: 2 SWIIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSR-QFAYIGFRTEQEAQDAI 60
Query: 390 RYINGTRLD 416
Y+N +D
Sbjct: 61 TYVNKCFID 69
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +3
Query: 180 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
++E+E+ +K L++G + + +E Q+ L+ + V + DK + G CF+
Sbjct: 11 KNEEEESVK----LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66
Query: 360 YAREDAE 380
+RE+A+
Sbjct: 67 PSREEAD 73
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +3
Query: 180 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
++E+E+ +K L++G + + +E Q+ L+ + V + DK + G CF+
Sbjct: 11 KNEEEESVK----LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66
Query: 360 YAREDAE 380
+RE+A+
Sbjct: 67 PSREEAD 73
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 417 HPASCHLYTSYNFRHLPAHSILQNKIHKVFSC 322
HP SC + SY FR + + L+N I+ + C
Sbjct: 16 HPLSCGTFESYTFRSILSIPKLRNGIYNCYHC 47
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 342 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 440
F F++Y A+EDA + N ++L D++I ++
Sbjct: 132 FAFIQYEAQEDATRALDATNSSKLMDKVISVEY 164
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 342 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 440
F F++Y A+EDA + N ++L D++I ++
Sbjct: 132 FAFIQYEAQEDATRALDATNSSKLMDKVISVEY 164
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
A +++ + TT+E + + G+I + +DK G+ FV + R+ A
Sbjct: 406 AQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
Query: 387 MRYINGTRLDDRIIRCD 437
++ R+ +RI+ C+
Sbjct: 466 LKRPE-KRMYNRIVVCN 481
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 342 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 440
F F++Y A+EDA + N ++L D++I ++
Sbjct: 92 FAFIQYEAQEDATRALDASNNSKLMDKVISVEY 124
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 342 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 440
F F++Y A+EDA + N ++L D++I ++
Sbjct: 133 FAFIQYEAQEDATRALDASNNSKLMDKVISVEY 165
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+++G L++ T +++ + + G+I ++ DK G+ FV + + A +
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 399 NGTRLDDRIIRCDWDAGFIEGR---QYGRGKTG 488
N +D R C+ A F R GRG+TG
Sbjct: 79 NPV-IDGRKANCN-IASFGRPRPSPPRGRGQTG 109
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+++G L++ T +++ + + G+I ++ DK G+ FV + + A +
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 399 NGTRLDDRIIRCDWDAGFIEGR---QYGRGKTG 488
N +D R C+ A F R GRG+TG
Sbjct: 79 NPV-IDGRKANCN-IASFGRPRPSPPRGRGQTG 109
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +3
Query: 177 SRSEQEKLLKASST-----LYIGNLSFYTTEEQIYELYSRCGDIR--RVIMGLDKYKKTP 335
++ E EK+++ T LY+ NL ++ EL+S G I +V++ + K
Sbjct: 206 AKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISK-- 263
Query: 336 CGFCFVEYYAREDAENCMRYINGTRLDDRII 428
G FVE+ E+A M +NG + ++ I
Sbjct: 264 -GVGFVEFSTSEEASKAMLKMNGKMVGNKPI 293
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
T+Y+GNL + ++ +L+ + G I + + K P G+ FVE+ DA++ +
Sbjct: 8 TIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYG 64
Query: 396 INGTRLDDRIIRCD 437
+G D +R +
Sbjct: 65 RDGYDFDGCRLRVE 78
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
TLY+G L+ E+ I + + G+I + + DK C FV Y +RE AE +
Sbjct: 229 TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADK----AC--AFVTYTSREGAEKAAQE 282
Query: 396 I-NGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 491
+ N ++ + ++ W G + Q G + GG
Sbjct: 283 LSNRLVINGQRLKLTW--GRPKPDQDGANQQGG 313
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+Y+ L + T E + + R G+I + D + GF FV + E A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 399 NGTRLDDRIIRC 434
N T +D R + C
Sbjct: 71 NHT-IDGRTVNC 81
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
++ +++G L+ TT + + + + G+I ++ D+ P GF FV Y
Sbjct: 40 SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +3
Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
S E + LYI NL T+E++ L+ G I +V++ K K + FV
Sbjct: 22 SGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVH 81
Query: 357 YYAREDAENCMRYINGTRLD 416
Y R ++ +D
Sbjct: 82 YAERTSVMRALKNTERYEID 101
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+++ L + TT E + ++ G+I + +DK GF FV + R+ A+ ++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
+++ L + TT E + ++ G+I + +DK GF FV + R+ A+ ++
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S TL++ N++ + ++ L+ + GDI R + K++ GF + YY A M
Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDI-RTLYTTCKHR----GFVMISYYDIRSARMAM 221
Query: 390 RYINGTRLDDR 422
R + L R
Sbjct: 222 RSLQNKPLRRR 232
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S TL++ N++ + ++ L+ + GDI R + K++ GF + YY A M
Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDI-RTLYTTCKHR----GFVMISYYDIRSARMAM 221
Query: 390 RYINGTRLDDR 422
R + L R
Sbjct: 222 RSLQNKPLRRR 232
>At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 830
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 237 SFYTTEEQIYELYSRCGDIRRV--IMGLDKYKKTPCGFCFVEYYA 365
S + E + ++Y++CGDI + + G Y + P + YA
Sbjct: 580 SLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYA 624
>At5g49650.2 68418.m06145 xylulose kinase, putative similar to
D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
Length = 426
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 129 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQI 263
N+S+ RD+ +GS K L+ + L G L FY TE +I
Sbjct: 342 NASLTREEIRDRCAEGSWDVFNKYLQQTQPLNNGKLGFYYTENEI 386
>At5g49650.1 68418.m06146 xylulose kinase, putative similar to
D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
Length = 558
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 129 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQI 263
N+S+ RD+ +GS K L+ + L G L FY TE +I
Sbjct: 342 NASLTREEIRDRCAEGSWDVFNKYLQQTQPLNNGKLGFYYTENEI 386
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYK 326
LK + +Y+ L T E++ E++S+CG I+ G + K
Sbjct: 272 LKVNPHIYVNGLPDDVTIEEVAEVFSKCGIIKEDDTGKPRIK 313
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +3
Query: 222 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 401
++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 402 GT 407
G+
Sbjct: 69 GS 70
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 539 TATPTVIVSSIFISNLASCFATTVLST-FNESSIPVTANYSVIQPRAIY 396
T T T + +S+ +++A+ T ++T E++ P T+ + P AIY
Sbjct: 491 TVTETAVATSVTETSVATSVPETAVATSVTETAAPATSKMRPLSPYAIY 539
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+++G L++ T + + + + G+I ++ DK G+ FV + E A + +
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 399 NGTRLDDRIIRCD 437
N +D R C+
Sbjct: 84 NPV-IDGRRANCN 95
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGL----DKYKKTPCGFCFVEYYAREDA 377
T+++GNL F +E++Y+L++ ++ I + D + G +V + RE A
Sbjct: 284 TVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAA 341
>At4g30870.1 68417.m04383 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to repair
endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
Length = 661
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 108 KRSYDSMNSSIEISSYRDQHFKGSRSEQEKLL 203
+++ D M SSI + YRDQ + RS +KL+
Sbjct: 362 RKNVDDMRSSIRDNRYRDQKLRLQRSGFKKLI 393
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 177 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 356
S++++E ++ T+Y+ ++ TEE + L+S CG + + D + + F FVE
Sbjct: 131 SKAQREDSIRR--TVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPH--SVLRFAFVE 186
Query: 357 YYAREDAENCMRYINGTRL 413
+ + A + + GT L
Sbjct: 187 FADDQGAHEALS-LGGTML 204
>At1g62400.1 68414.m07040 protein kinase, putative similar to
protein kinase gi|170047|gb|AAA34002; contains protein
kinase domain, Pfam:PF00069
Length = 345
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 108 KRSYDSMNS-SIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIY 266
K+ +DSM S S+ + S + ++ S+ E+E+ S L+IGN +IY
Sbjct: 3 KKRFDSMESWSMILESENVETWEASKGEREEWTADLSQLFIGNKFASGAHSRIY 56
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
S TL +GN+S + ++ L+ + GDI+ + GF V Y A+N
Sbjct: 216 SRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNR-----GFIMVSYCDIRAAQNAA 270
Query: 390 R-----YINGTRLDDR 422
R + GT+LD R
Sbjct: 271 RALQNKLLRGTKLDIR 286
>At5g57670.1 68418.m07207 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 416
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 536 RLWKNNSTENKPKYPRTLIMC 598
R W+ + T+NKPK P+ LI C
Sbjct: 72 RKWRGSETKNKPK-PQPLIQC 91
>At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 506
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +3
Query: 96 VYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELY 275
V +MKRS S +SI S+ D F SRS++ L G T + +
Sbjct: 219 VEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGF 278
Query: 276 SRCGDIRRVIMGLDKYKKTPC 338
R G++ R LD KK C
Sbjct: 279 CRAGEVERAKKILDFMKKNGC 299
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 1280
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 557 CYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVT 432
C++ + P + S+ FI S F T V++ FN+S I T
Sbjct: 867 CFHVLRKSDPPFVPSTTFIKQGLSSFITFVVTHFNDSRISNT 908
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/81 (23%), Positives = 41/81 (50%)
Frame = +3
Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 350
+ S++++E ++ T+Y+ ++ TEE + L+S CG + V + + F F
Sbjct: 116 RASKAQREDSIRR--TVYVSDIDQSVTEEGLAGLFSSCGQV--VDCRICGDPNSVLRFAF 171
Query: 351 VEYYAREDAENCMRYINGTRL 413
VE+ + A + + + GT +
Sbjct: 172 VEFSDDQGARSALS-LGGTMI 191
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +3
Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IM--GLDKYKKTPCGFCFVEYYAREDAE 380
++ LY+GNLS E + + R G I V IM D+ K+ FV + R D +
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 381 NCMRYINGTRLDDRIIRCDW 440
+ G + + ++ W
Sbjct: 238 AAKDEMQGIIVYEYELKIGW 257
>At5g06050.1 68418.m00670 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 682
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 182 KRTRKITKSFVNALHWKPFILHN 250
K ++I ++VNALHWK L N
Sbjct: 499 KYWKEIISNYVNALHWKQIGLRN 521
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +3
Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
+A STL+I NL TE+++ +L SR I+ + P F ++ E A +
Sbjct: 220 RACSTLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRARGGMP--VAFADFEEIEQATD 275
Query: 384 CMRYINGTRL 413
M ++ G L
Sbjct: 276 AMNHLQGNLL 285
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = +3
Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 350
KG+ Q K +K +++G + TE+++ + +++ G++ + D GF F
Sbjct: 96 KGAGGNQSKDIKTKK-IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 351 VEYYARE 371
V + + E
Sbjct: 155 VIFDSEE 161
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = +3
Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 350
KG+ Q K +K +++G + TE+++ + +++ G++ + D GF F
Sbjct: 96 KGAGGNQSKDIKTKK-IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 351 VEYYARE 371
V + + E
Sbjct: 155 VIFDSEE 161
>At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 583
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 261 IYELYSRCGDIRRVIMGLDKYKKT 332
+ LYSRCGD+ + DK K+T
Sbjct: 249 LINLYSRCGDVGKAREVFDKMKET 272
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +3
Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
+++ L + TT E + + G+I + +DK GF FV + R+ A ++
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 399 NGTRLDDRIIRC 434
R+ +R + C
Sbjct: 225 E-KRMYNRTVSC 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,307,553
Number of Sequences: 28952
Number of extensions: 267173
Number of successful extensions: 908
Number of sequences better than 10.0: 174
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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