Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A12
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02475.1 68414.m00198 expressed protein                             30   0.80 
At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic...    29   1.8  
At5g38400.1 68418.m04642 hypothetical protein                          27   7.4  
At5g48060.1 68418.m05938 C2 domain-containing protein contains I...    26   9.8  

>At1g02475.1 68414.m00198 expressed protein
          Length = 219

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 184 WRLFINLFRMKLKNSCYARSLKPTPPKRKH 273
           W L  N F   +K S  AR+L+PTP ++ H
Sbjct: 124 WSLKYNAFGQDIKYSWLARNLQPTPNQKIH 153


>At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic
           acid-induced protein 12 (IAA12) identical to SP|Q38830
           Auxin-responsive protein IAA12 (Indoleacetic
           acid-induced protein 12) {Arabidopsis thaliana}
          Length = 239

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 181 PWRLFIN-LFRMKLKNSCYARSLKPTPPKRKHRQ 279
           PWR+FIN + R+++  +  A  L P   ++K RQ
Sbjct: 201 PWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQ 234


>At5g38400.1 68418.m04642 hypothetical protein
          Length = 151

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 214 KLKNSCYARSLKPTPPKRK 270
           K + + Y  S+KP PPKRK
Sbjct: 42  KARMNVYKESMKPLPPKRK 60


>At5g48060.1 68418.m05938 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1036

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 133 PPQLDVKVSWASAI 92
           PP +D+K+SWA A+
Sbjct: 903 PPHMDMKLSWAEAV 916


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,264,233
Number of Sequences: 28952
Number of extensions: 171600
Number of successful extensions: 403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)