Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A04
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52390.2 68416.m05762 tatD-related deoxyribonuclease family p... 140 7e-34
At3g52390.1 68416.m05761 tatD-related deoxyribonuclease family p... 130 1e-30
At3g55990.1 68416.m06221 expressed protein contains Pfam profile... 30 1.2
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 30 1.2
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 29 2.7
At5g44700.1 68418.m05477 leucine-rich repeat transmembrane prote... 28 4.7
At2g28920.1 68415.m03514 zinc finger (C3HC4-type RING finger) fa... 28 6.2
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 27 8.2
At4g18380.1 68417.m02728 F-box family protein contains F-box dom... 27 8.2
At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 27 8.2
At3g06960.2 68416.m00827 expressed protein 27 8.2
At3g06960.1 68416.m00826 expressed protein 27 8.2
At1g45160.1 68414.m05177 protein kinase family protein contains ... 27 8.2
>At3g52390.2 68416.m05762 tatD-related deoxyribonuclease family
protein similar to SP|P27859 Deoxyribonuclease tatD (EC
3.1.21.-) (DNAse tatD) {Escherichia coli}; contains Pfam
profile PF01026: TatD related DNase
Length = 323
Score = 140 bits (339), Expect = 7e-34
Identities = 64/124 (51%), Positives = 87/124 (70%), Gaps = 4/124 (3%)
Frame = +2
Query: 290 DIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTD 469
DI N TD M+KG+Y+G H PD+ VL RAW++G+++IIVTGGSLE+S++A+ ++ TD
Sbjct: 11 DIAVNFTDGMFKGLYHGKNCHVPDIATVLNRAWSAGVDRIIVTGGSLEESREALAIAETD 70
Query: 470 SKLFTTVGCHPTRCSEF--LSNPDDYLQGLRDLISG--NKDKVVAIGECGLXYERFHFCE 637
+LF TVG HPTRC+EF +P+ + Q L L K KVVAIGECGL Y+R FC
Sbjct: 71 GRLFCTVGVHPTRCNEFEESGDPEKHYQALFSLAKEGMQKGKVVAIGECGLDYDRLQFCS 130
Query: 638 KEVQ 649
++Q
Sbjct: 131 VDIQ 134
>At3g52390.1 68416.m05761 tatD-related deoxyribonuclease family
protein similar to SP|P27859 Deoxyribonuclease tatD (EC
3.1.21.-) (DNAse tatD) {Escherichia coli}; contains Pfam
profile PF01026: TatD related DNase
Length = 304
Score = 130 bits (313), Expect = 1e-30
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 4/115 (3%)
Frame = +2
Query: 317 MYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGC 496
M+KG+Y+G H PD+ VL RAW++G+++IIVTGGSLE+S++A+ ++ TD +LF TVG
Sbjct: 1 MFKGLYHGKNCHVPDIATVLNRAWSAGVDRIIVTGGSLEESREALAIAETDGRLFCTVGV 60
Query: 497 HPTRCSEF--LSNPDDYLQGLRDLISG--NKDKVVAIGECGLXYERFHFCEKEVQ 649
HPTRC+EF +P+ + Q L L K KVVAIGECGL Y+R FC ++Q
Sbjct: 61 HPTRCNEFEESGDPEKHYQALFSLAKEGMQKGKVVAIGECGLDYDRLQFCSVDIQ 115
>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 487
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 300 LT*QMICIKEYIMGQENMSQIWTWY*RELGLVASTKSLLLEGVLKTVKKRSSFLGQTLSY 479
LT Q+ C++ ++++ Q W W R+ L LLLE K KR F+G +L+
Sbjct: 165 LTAQVTCMRNG--RRDSLYQNWRWQPRDCSLPKFKAKLLLE---KLRNKRMMFVGDSLNR 219
Query: 480 SQPWD 494
+Q W+
Sbjct: 220 NQ-WE 223
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 552 CEISYQETRTKLWL*ESVDXIMKGFTF 632
C+++YQET+ ++WL +V ++G F
Sbjct: 3023 CDMAYQETQEEIWLEYAVSCFLQGIRF 3049
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 552 CEISYQETRTKLWL*ESVDXIMKGFTF 632
C+++YQ+T+ ++WL +V ++G F
Sbjct: 3096 CDMAYQDTQDEIWLEYAVSCFLQGIRF 3122
>At5g44700.1 68418.m05477 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1252
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 528 LDRNSLHLVG*HPTVVNNLESVLESSIAF--LLSSRLP 421
+D +S LVG PT ++NL S LES F LLS +P
Sbjct: 100 IDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIP 137
>At2g28920.1 68415.m03514 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 145
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 19 VHVLMRCTQPYHYY*FIIDLSCFYNLSCVPLKCCFKLY 132
V VL+RC +H ID CFY L+C + F+ +
Sbjct: 106 VRVLVRCKHVFHVD--CIDSWCFYKLTCPICRAPFQWF 141
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 374 LERAWTSGINKIIVTGG--SLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQ 547
+++ WT+ + + GG SL + +A + + + + + P+R E + D +L+
Sbjct: 133 VKQRWTNALTEAANIGGEHSLNWTDEAEMIEKIVADVSNKLNVIPSRDFEEMVGLDAHLR 192
Query: 548 GLRDLISGNKDKVVAIGECG 607
L L+ N D+V IG G
Sbjct: 193 KLDSLLCLNSDEVKMIGIWG 212
>At4g18380.1 68417.m02728 F-box family protein contains F-box domain
Pfam:PF00646
Length = 380
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 461 RTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLXYERFHFCEK 640
R+ L + + P F + PD L LI N V A+G C + +RFH
Sbjct: 6 RSSDPLLSRIHPEPQEIDHFDNLPDSILL----LIFNNIGDVKALGRCSVVSKRFHSLIP 61
Query: 641 EVQ 649
+V+
Sbjct: 62 QVE 64
>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 530
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 425 SLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGL 553
+L D+KK IEL SK ++ +G S+F D Y +GL
Sbjct: 55 ALSDAKKTIELKPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGL 97
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 509 CSEFLSNPDDYLQGLRDLISGNKDK 583
CSEFL +PDD L D G+ DK
Sbjct: 148 CSEFLLSPDDTLLLSYDAYKGDLDK 172
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 509 CSEFLSNPDDYLQGLRDLISGNKDK 583
CSEFL +PDD L D G+ DK
Sbjct: 148 CSEFLLSPDDTLLLSYDAYKGDLDK 172
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 416 TGGSLEDSKKAIELSRTDSKLFTTVGCHPTR--CSEFLSNPDDYLQGLRDLISGNKDKVV 589
T GS + +K +LSR + CHP + CS S+ + L+G +++K++
Sbjct: 62 TTGSSKQERKGTKLSRWLASYKPKYSCHPPKYACSSTTSSEEIKLRGKNS--GKDEEKMI 119
Query: 590 AIGE 601
I E
Sbjct: 120 KISE 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,246,070
Number of Sequences: 28952
Number of extensions: 231188
Number of successful extensions: 506
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -