Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0032
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51090.1 68414.m05744 heavy-metal-associated domain-containin...    27   3.3  
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina...    27   4.3  
At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger) fa...    26   5.7  
At5g03640.1 68418.m00323 protein kinase family protein contains ...    25   10.0 

>At1g51090.1 68414.m05744 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 171

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 142 LFXEWVRGRQCCIKTITSQRC 204
           ++  W  GRQCC + + SQ C
Sbjct: 148 VYESWGGGRQCCHEDMNSQGC 168


>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 772

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 156 GPRQAVLYQNNHIAALHRIGRQDRVLSLDQGPGAF 260
           G R   L  N  +   H +GRQ    SLD  P AF
Sbjct: 379 GHRNYELMLNLQLGIRHSVGRQAPAASLDLKPSAF 413


>At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 407

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 315 RARPRS*AGWSPRGATASRTHLDLDREIERDLADRFDAALR 193
           R RP   +  S    + S  +LDL+ E+E  + DR ++ +R
Sbjct: 349 RVRPNRSSSSSSAAISTSSDNLDLNIEVESRVLDRSNSVMR 389


>At5g03640.1 68418.m00323 protein kinase family protein contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 926

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 210 FDAALRCDCFDTALPASDPLXE*LLPSESDITT*NECI 97
           FD +LRC    T L +S PL    +   S   T + CI
Sbjct: 685 FDLSLRCTVSPTLLNSSSPLHADAMRLSSGSRTGSNCI 722


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,793,540
Number of Sequences: 28952
Number of extensions: 95405
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)