Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0031
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ...    31   1.0  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    28   5.5  
At2g39190.2 68415.m04814 ABC1 family protein contains Pfam domai...    28   7.3  
At5g26910.1 68418.m03209 expressed protein                             27   9.6  
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote...    27   9.6  

>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 304

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 614 PPSLTGSLSKKFTTLPSSFSPFLAVSTMLFNQKCDLQSYPKRTG 483
           PPS     SK    +PSS SP+   ST++  + CDL   P   G
Sbjct: 150 PPSFVVEPSKNSKYIPSS-SPWSCPSTVVEQKSCDLYEIPAMEG 192


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 595  DPVNDGGQWDMLVNLVNKYGLMPKKCFPESYSSRRSVR 708
            D V D      ++  +N +G  PK+ FP+++  RR+ R
Sbjct: 3211 DAVTDPAMKASILAQINHFGQTPKQLFPKAHVKRRTDR 3248


>At2g39190.2 68415.m04814 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 814

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 351 ILRLKT*SEVSVFRLLMATSNGSYRVQTF*ANYFLVLHKNLC 226
           +LRL       V R L+  +NG+  ++TF +   LV+ + LC
Sbjct: 661 VLRLLASKNGVVLRRLLMAANGTSLIRTFISREALVIRQKLC 702


>At5g26910.1 68418.m03209 expressed protein
          Length = 900

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 520 WLNNIVETAKKGEKLDGRVVNFLLKDPVND 609
           WL+   ET ++G  ++G +V+ L+ D VND
Sbjct: 842 WLDFERETYEEGIDIEGEIVSTLVDDLVND 871


>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 882

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 593 LSKKFTTLPSSFSPFLAVSTMLFNQKCDLQSY 498
           L+KKF       +P LA  ++  ++KCD+ SY
Sbjct: 760 LTKKFHNAVGYIAPELAQQSLRASEKCDVYSY 791


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,878
Number of Sequences: 28952
Number of extensions: 300623
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)