Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0030
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    33   0.17 
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-...    32   0.39 
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    30   1.2  
At5g53800.1 68418.m06685 expressed protein                             30   1.6  
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-...    30   1.6  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    30   1.6  
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p...    29   2.1  
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p...    29   2.1  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    29   3.6  
At2g22795.1 68415.m02704 expressed protein                             29   3.6  
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f...    28   4.8  
At3g53640.1 68416.m05925 protein kinase family protein contains ...    28   6.4  
At2g33793.1 68415.m04145 expressed protein                             28   6.4  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    28   6.4  
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    27   8.4  

>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
            Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
            [Bos taurus]
          Length = 897

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +2

Query: 296  DSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 475
            +S ++     R  R   SP     R +     SDE+ DD +++S++  ++     GK + 
Sbjct: 794  ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852

Query: 476  PERHRELRSH*LKHTETCEKNPL 544
              RH   RS   KH++   KN L
Sbjct: 853  -RRHVSSRSPHSKHSQ--HKNTL 872


>At1g07510.1 68414.m00804 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 813

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 252 RGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 428
           RGI     +Q+   +   KN +  KDV   E+A Q +++ V HF +   K+     K P
Sbjct: 303 RGIFNIGKAQITRADKNSKNKIYFKDVAGCEEAKQEIMEFV-HFLQNPKKYEDLGAKIP 360


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 234 LLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 115
           ++ GN    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +2

Query: 284 EAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEG 463
           E+  +S +E     R+ R          RSR  R+D   +  D   ES   +  Y   E 
Sbjct: 67  ESGSESEKEERRRSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESES---ESEYSDSEE 123

Query: 464 KEQIPERHRELRSH*LKHTETCE-KNPLPTKDVIEQEKS 577
            E   ER R  R    +  E  E K     KD  ++ KS
Sbjct: 124 SESEDERRRRKRKRKEREEEEKERKRRRREKDKKKRNKS 162


>At2g29080.1 68415.m03535 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 809

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 252 RGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 428
           RGI     + +   +   KN +  KDV   ++A Q +++ V HF K   K+     K P
Sbjct: 298 RGIFNIGKATITRADKHSKNKIYFKDVAGCDEAKQEIMEFV-HFLKNPKKYEDLGAKIP 355


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 82  SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKSLF 252
           S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E    S  
Sbjct: 78  SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS-- 135

Query: 253 EVSRSLI 273
           EVS  ++
Sbjct: 136 EVSSDIL 142


>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 385

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = +2

Query: 293 RDSGEEPASGQRRCRSGESPPE-PLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG-EGK 466
           RD   +  S ++R R  E   E   GR R   ++ D  +D  R       RS R+  E  
Sbjct: 243 RDYYSDRDSDRQREREREKDRERERGRDRYRERERDYGNDR-RSRRDYDSRSRRNDYEDD 301

Query: 467 EQIPERHRELRSH*LKHTETCEKNPLPTKDVIEQEKSA 580
               +R    RS     +   E+ P P +D   +EKSA
Sbjct: 302 RSRHDRRSRSRSRSRSRSVQIEREPTPKRDSSNKEKSA 339


>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 393

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = +2

Query: 293 RDSGEEPASGQRRCRSGESPPE-PLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG-EGK 466
           RD   +  S ++R R  E   E   GR R   ++ D  +D  R       RS R+  E  
Sbjct: 251 RDYYSDRDSDRQREREREKDRERERGRDRYRERERDYGNDR-RSRRDYDSRSRRNDYEDD 309

Query: 467 EQIPERHRELRSH*LKHTETCEKNPLPTKDVIEQEKSA 580
               +R    RS     +   E+ P P +D   +EKSA
Sbjct: 310 RSRHDRRSRSRSRSRSRSVQIEREPTPKRDSSNKEKSA 347


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 82  SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA-TEKTQKSLF 252
           S SD+PS  L+D+  ++ +LK  L+G  +     VDTN      +AE  A  EK   +L 
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNLDAEDRAAERKAEVEKAVSTLA 591

Query: 253 EVSR 264
           + S+
Sbjct: 592 QKSK 595


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +2

Query: 305 EEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 484
           +E AS Q   +  E+  +    S +  +  ++ ++   KE +AP    +  E ++   E 
Sbjct: 549 KEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEE 608

Query: 485 HRELRSH*LKHTETCEK 535
                    K TET EK
Sbjct: 609 SASQEETKEKETETKEK 625


>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
           family protein similar to pVHL-interacting
           deubiquitinating enzyme 1 type II [Homo sapiens]
           GI:18698435; contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 974

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 305 EEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEG 463
           E     +R     +SPP PLG +  L   ++   DD  +E     +S   G G
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNG 498


>At3g53640.1 68416.m05925 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 642

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +2

Query: 293 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 457
           R+S  +   G+       S     GR     +  D+  D GR+E  +    Y+SG
Sbjct: 82  RESNRDNYRGRSSRDKARSSSRETGRENERERRKDQDRDRGRREDQSDQEIYKSG 136


>At2g33793.1 68415.m04145 expressed protein
          Length = 212

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 365 GRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*LKHTETCEKNPL 544
           G    L+Q  ++AH+DGRK+      S  S E K +I E   +L       ++   K+  
Sbjct: 42  GIMSALQQFREKAHEDGRKKKEESISSV-STEVKSKIDELKSKLEKERQNFSKALSKSSK 100

Query: 545 PTKDVIEQE 571
             +++++ E
Sbjct: 101 ECENILKDE 109


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
            Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
            [Bos taurus]
          Length = 884

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +2

Query: 296  DSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 472
            +S ++     R  R   SP     R +     SDE+ DD +++S++  ++     GK +
Sbjct: 824  ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR 882


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
           subunit, putative similar to contains 6 WD-40 repeats
           (PF00400); katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 974

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 275 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDE 400
           +P +  R +GE P    RR RS  +   P+  +R     SDE
Sbjct: 582 DPRKTSRQTGETPVISTRRARSTPARVMPIVLNRDSNVTSDE 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,289
Number of Sequences: 28952
Number of extensions: 268922
Number of successful extensions: 1006
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)