Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0029
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast...    37   0.009
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial...    37   0.009
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast...    33   0.11 
At5g19130.2 68418.m02277 GPI transamidase component family prote...    31   0.77 
At5g19130.1 68418.m02276 GPI transamidase component family prote...    31   0.77 
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro...    28   5.4  
At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside h...    27   7.2  
At3g60180.2 68416.m06721 uridylate kinase, putative / uridine mo...    27   9.5  
At3g60180.1 68416.m06720 uridylate kinase, putative / uridine mo...    27   9.5  

>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
           (ATPC1) identical to SP|Q01908 ATP synthase gamma chain
           1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}
          Length = 373

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +3

Query: 138 ATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAE 242
           A+ + +  R+ SVKN QKI ++MK+V+AAK  RA+
Sbjct: 51  ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQ 85


>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
           (ATPC) identical to SP|Q96250 ATP synthase gamma chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase
          Length = 325

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 18/33 (54%), Positives = 28/33 (84%)
 Frame = +3

Query: 129 RNMATXKAISIRLKSVKNIQKIXQSMKMVSAAK 227
           R+++T + +  R+KSVKNIQKI ++MKMV+A+K
Sbjct: 41  RSIST-QVVRNRMKSVKNIQKITKAMKMVAASK 72


>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
           (ATPC2) identical to SP|Q01909 ATP synthase gamma chain
           2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase;
           similar to ATP synthase gamma-subunit GI:21241 from
           [Spinacia oleracea]
          Length = 386

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +3

Query: 162 RLKSVKNIQKIXQSMKMVSAAKYTRAE 242
           R+ SVKN QKI ++M++V+AA+  RA+
Sbjct: 69  RIDSVKNTQKITEAMRLVAAARVRRAQ 95


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 527 TSDLISTLMMCFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 375
           T  L+  ++   PY +C++P   SPT  ++M+    S   L   +  P C+
Sbjct: 504 TLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 527 TSDLISTLMMCFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 375
           T  L+  ++   PY +C++P   SPT  ++M+    S   L   +  P C+
Sbjct: 507 TLHLLGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557


>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
           protein
          Length = 210

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 536 YFLGRKSVGHCHSHLRIRV 592
           YF+  K+ GHC++ L++RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170


>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside
           hydrolase family protein contains Pfam profile PF01156:
           Inosine-uridine preferring nucleoside hydrolase
          Length = 890

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 427 AENIKVICVGDKSRG---ILQRLYGKHIISVLMRSDV 528
           AE+IKVI  GD+SR    ++ +L GK  I +L R D+
Sbjct: 820 AEHIKVIAEGDESRDGKILIDKLRGKQ-IKILERVDL 855


>At3g60180.2 68416.m06721 uridylate kinase, putative / uridine
           monophosphate kinase, putative / UMP kinase, putative
           similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
           monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
           (Swiss-Prot:O04905) [Arabidopsis thaliana]
          Length = 204

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 63  MLGRFGPGVGTQVVAVVYHQPNRNMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAE 242
           +LG  G G GTQ   VV H    + +    +   +KS      + QS  M++  +   +E
Sbjct: 26  VLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQS--MIAEGRIVPSE 83

Query: 243 RDLKLL 260
             +KLL
Sbjct: 84  ITVKLL 89


>At3g60180.1 68416.m06720 uridylate kinase, putative / uridine
           monophosphate kinase, putative / UMP kinase, putative
           similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
           monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
           (Swiss-Prot:O04905) [Arabidopsis thaliana]
          Length = 204

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 63  MLGRFGPGVGTQVVAVVYHQPNRNMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAE 242
           +LG  G G GTQ   VV H    + +    +   +KS      + QS  M++  +   +E
Sbjct: 26  VLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQS--MIAEGRIVPSE 83

Query: 243 RDLKLL 260
             +KLL
Sbjct: 84  ITVKLL 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,087
Number of Sequences: 28952
Number of extensions: 307239
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)