Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0028
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40270.1 68418.m04885 metal-dependent phosphohydrolase HD dom...    27   7.3  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    27   9.6  

>At5g40270.1 68418.m04885 metal-dependent phosphohydrolase HD
           domain-containing protein similar to SP|Q60710
           Interferon-gamma inducible protein MG11 {Mus musculus};
           contains Pfam profile PF01966: HD domain
          Length = 473

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 359 DLFS*MYTHSKVMYVKFI---NLIKCNNKLQFQS 267
           DL+  +YTHSKV  ++ +    ++K NN L+  S
Sbjct: 262 DLYRTVYTHSKVKAIELMIVDAMVKANNHLEISS 295


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 54  NFTAYFLCIHYNR*KNTHRHS*DISFRKN-PL-IWHNTGLCR 173
           NF A+  CIH  +     RH   ISF  + PL IW + G+CR
Sbjct: 132 NFAAHSDCIHIPQTIRMSRHDHRISFTSSLPLGIW-SCGVCR 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,741
Number of Sequences: 28952
Number of extensions: 176583
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)