Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0023
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident...    32   0.22 
At5g56350.1 68418.m07033 pyruvate kinase, putative similar to py...    31   0.50 
At4g26390.1 68417.m03797 pyruvate kinase, putative identical to ...    31   0.66 
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa...    30   0.87 
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa...    30   0.87 
At3g04420.1 68416.m00468 no apical meristem (NAM) family protein...    29   2.0  
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa...    29   2.7  
At2g17960.1 68415.m02082 hypothetical protein                          28   3.5  
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    28   3.5  
At2g20240.1 68415.m02365 expressed protein                             28   4.6  
At4g16730.1 68417.m02527 terpene synthase/cyclase family protein...    27   8.1  
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    27   8.1  
At1g79890.1 68414.m09334 helicase-related similar to CHL1 potent...    27   8.1  
At1g66245.1 68414.m07520 hypothetical protein                          27   8.1  

>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
           identical to COP1-Interacting Protein 7 (CIP7)
           GI:3327868 from [Arabidopsis thaliana]
          Length = 1058

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -2

Query: 514 GEASSSVCTGLAHTLAVSTMSLLAERLSPEALTSCCSPCARCSTIL*AAVARS 356
           G  SSS+ +    T+  S  S +    +PEA  S   P  R STI   AVAR+
Sbjct: 787 GSVSSSLASKKTPTVTKSVKSSIKNEKTPEAAQSKAKPVLRSSTIERLAVART 839


>At5g56350.1 68418.m07033 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 498

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 270 IYLQPGIAVSESCDY*IKTIQQVVPCQSLKKHCRTEPPGFVVYKNDTTISFLFL 109
           I L+ G  ++ S DY +K  +  + C S KK      PG V+   D TIS L L
Sbjct: 89  IQLKQGQEITISTDYDLKGDENTI-CMSYKKLAVDVNPGMVILCADGTISLLVL 141


>At4g26390.1 68417.m03797 pyruvate kinase, putative identical to
           probable pyruvate kinase, cytosolic isozyme (EC
           2.7.1.40) [Arabidopsis thaliana] SWISS-PROT:O65595
          Length = 497

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -3

Query: 270 IYLQPGIAVSESCDY*IKTIQQVVPCQSLKKHCRTEPPGFVVYKNDTTISFLFL 109
           I L+ G  ++ S DY +K  ++ + C S KK  +   PG V+   D TIS   L
Sbjct: 88  IQLKQGQEITISTDYDLKGDEKTI-CMSYKKLAQDVNPGMVILCADGTISLKVL 140


>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = -2

Query: 541 LSFEDLL*IGEASSSVCTGLAHTLAVSTMSLLAERLSPEALTSCCSPCARC 389
           +S+E+LL +GE   SV TGL+ + A+S+  LLA    P   T     CA C
Sbjct: 447 MSYEELLDLGERIGSVNTGLSDS-AISS-CLLATMYYPSYQTEEQRKCAIC 495


>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = -2

Query: 541 LSFEDLL*IGEASSSVCTGLAHTLAVSTMSLLAERLSPEALTSCCSPCARC 389
           +S+E+LL +GE   SV TGL+ + A+S+  LLA    P   T     CA C
Sbjct: 447 MSYEELLDLGERIGSVNTGLSDS-AISS-CLLATMYYPSYQTEEQRKCAIC 495


>At3g04420.1 68416.m00468 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 342

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 55  ILKTKSEISALTDFLDWLEKEKGDGSVILIYHEPRRFSPTMLLEALT 195
           IL+ + EI      + ++ KE G      + HE   FSPT ++   T
Sbjct: 97  ILRNRQEIGEKKVLMFYMSKELGGSKSDWVMHEYHAFSPTQMMMTYT 143


>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 666

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 541 LSFEDLL*IGEASSSVCTGLAHTLAVSTMSLLAERLSPEALTSCCSPCARC 389
           +S+E+LL +GE    V TGL+  + +  M       S         PC  C
Sbjct: 572 MSYEELLALGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVC 622


>At2g17960.1 68415.m02082 hypothetical protein
          Length = 121

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 25  RMLKDMVSHKILKTKSEISALTDFLDWLEKE 117
           R L+  VSH +L TK + +    ++DW+E +
Sbjct: 84  RKLRSPVSHCMLVTKCQTTLQIGYIDWMESK 114


>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +1

Query: 13  EGRYRMLKDMVSHKILKTKSEISALTDFLDWLEKE----KGDGSVILIYHEPRRFSPTML 180
           E +   + D++   +    S++  +  F+DWL+KE      + +V+  +  P + + T L
Sbjct: 338 ETKGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPEKKADT-L 396

Query: 181 LEALTRYDLLDRFNSIVAGFTD 246
            EA   Y  L +    ++ ++D
Sbjct: 397 QEAAVEYRELKKLEKELSSYSD 418


>At2g20240.1 68415.m02365 expressed protein 
          Length = 713

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 221 LKRSNRSYLVK--ASRSIVGLNLLGSWYIRMTLPSPFSFSNQSRKSVKADIS 72
           L RSN  YLV    +  I+  +   SW       SPFS S+ SR S   D S
Sbjct: 285 LNRSNYEYLVGNITNSEIMSPSSRHSWDCANKFESPFSSSSLSRVSFSPDSS 336


>At4g16730.1 68417.m02527 terpene synthase/cyclase family protein
           similar to myrcene/ocimene synthase [GI:9957293];
           contains Pfam profile: PF01397 terpene synthase family
          Length = 547

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = -2

Query: 538 SFEDLL*IGEASSSVCTGLAHTLAVSTMSLLAERLSPEALTSCCSPCARCSTIL*AAVAR 359
           SFE+ +  G  SSSV T L H  +V +  +  + L+ ++     S    C+TIL   +A 
Sbjct: 386 SFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKNH--SVVRSCATIL--RLAN 441

Query: 358 SMALSTD 338
            +A ST+
Sbjct: 442 DLATSTE 448


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 25  RMLKDMVSHKILKTKSEISALTDFLDWLEKEKGD 126
           ++LK++ S ++ K KSE +ALTD    L +EK D
Sbjct: 50  QLLKELTS-EVNKLKSEYTALTDESRELTQEKND 82


>At1g79890.1 68414.m09334 helicase-related similar to CHL1 potential
           helicase protein (GI:2632247) [Homo sapiens]; similar to
           helicase GB:AAB06962 [Homo sapiens]
          Length = 882

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 34  KDMVSHKILKTKSEISALTDFLDWLEKEKGDGSVIL 141
           KD V+H+ +   +   A +D L  L    GDG +I+
Sbjct: 489 KDPVAHEEMSKLTSFRAFSDMLVALTNNNGDGRIII 524


>At1g66245.1 68414.m07520 hypothetical protein
          Length = 287

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 7   RHEGRYRMLKDMV--SHKILKTKSEISALTDFLDWLEKEKG 123
           +HE       D +  S K  K+ S+ ++  D+LDW+E  +G
Sbjct: 167 QHEENTVKTSDQIDQSEKSTKSPSDFASKKDYLDWIEYVEG 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,270
Number of Sequences: 28952
Number of extensions: 209140
Number of successful extensions: 623
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)