Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0017
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04870.1 68418.m00510 calcium-dependent protein kinase isofor...    30   1.6  
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911...    29   2.1  
At1g12080.2 68414.m01397 expressed protein                             29   2.8  
At5g09470.1 68418.m01096 mitochondrial substrate carrier family ...    28   4.9  
At1g40133.1 68414.m04768 hypothetical protein                          28   4.9  
At1g47970.1 68414.m05343 expressed protein                             28   6.5  
At5g39590.1 68418.m04795 expressed protein                             27   8.5  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   8.5  
At1g75720.1 68414.m08796 hypothetical protein                          27   8.5  

>At5g04870.1 68418.m00510 calcium-dependent protein kinase isoform
           AK1 (AK1) identical to calcium-dependent protein kinase,
           isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 610

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
 Frame = +2

Query: 371 AKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV-YKAIKIR*PQLPTSGDE 547
           A M   +   EA   ELRSRL D ++     ++T+ +   +V  K  +IR    P + +E
Sbjct: 31  ASMSNGDIASEAVSGELRSRLSDEVQNKPPEQVTMPKPGTDVETKDREIRTESKPETLEE 90

Query: 548 -NLKKMIERLREHEXQVSQGPRRQPGEVPAARERPSQEK 661
            +L+   E  +E + +    P  +P + PA  ++P   K
Sbjct: 91  ISLESKPETKQETKSETK--PESKP-DPPAKPKKPKHMK 126


>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
           Plant protein of unknown function (DUF869)
          Length = 982

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 425 SRLKDHLEGVEKTRLTLEQQTAEVYKAIKIR*PQLPTSGDENLKKM 562
           S LK HLE +   +LT+E + A +  A+K    Q+ +  +EN +K+
Sbjct: 108 SALKTHLETITLAKLTVEDRAAHLDGALKECMRQIRSLKEENEQKL 153


>At1g12080.2 68414.m01397 expressed protein
          Length = 138

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +3

Query: 57  VEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLIAA 236
           VE  E + + TE + +E  +     EVI   PV     ++A+   +TP+V E ++K    
Sbjct: 62  VEEAEKKDEETEKKTEEKDE---KTEVITETPVVEEEEKKAEEVTETPAVVEEEKKTEVV 118

Query: 237 EERR 248
           EE++
Sbjct: 119 EEKQ 122


>At5g09470.1 68418.m01096 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 337

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 643 LSSCWNFSWLPARTLRNLXLMFAQTLDHLLEVLVAACR 530
           +SS W  SWL       +      T DH+ E+LVA  R
Sbjct: 205 VSSLWRGSWLTVNRAMIVTASQLATYDHVKEILVAGGR 242


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 329 QTNNFIVATKEALDAKMETXEEKREAYINE 418
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At1g47970.1 68414.m05343 expressed protein
          Length = 198

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 457 EDQVDPGTADRGSVQGHQDKMTTAADKRRREPQEDDRAS 573
           E+ +D G  D     G   K + A  KR+R P+ED+  S
Sbjct: 150 EEDIDEGEDDENDNSGGAGK-SEAPPKRKRAPEEDEEDS 187


>At5g39590.1 68418.m04795 expressed protein
          Length = 542

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 669 CCSFSWDGRSRAAGTSPGC 613
           C + SWDGRS  A    GC
Sbjct: 166 CWTMSWDGRSSKAAEMKGC 184


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 57  VEAMEVETKSTEIRCQEMSKGGLAYEV 137
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


>At1g75720.1 68414.m08796 hypothetical protein
          Length = 197

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 18  DAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKT 197
           ++IQ+  SL  LK E    + +  ++R           E +      V VPR  D P ++
Sbjct: 75  ESIQMRNSLSCLKEELERTKQELQKLRVDPGVNETKLDETVFKTKFEVLVPRVDDEPIRS 134

Query: 198 PSVEEIQEK 224
           P +  + EK
Sbjct: 135 PRLRSMSEK 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,466
Number of Sequences: 28952
Number of extensions: 212266
Number of successful extensions: 830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)