Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0014
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    29   4.0  
At5g04690.1 68418.m00477 expressed protein                             29   5.3  
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    29   5.3  

>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 500 RSDFIELAFISEVAMCC 450
           R DF+ELA +S  A+CC
Sbjct: 710 RKDFVELAILSRTAICC 726


>At5g04690.1 68418.m00477 expressed protein
          Length = 625

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 722 KVTSVPVPLELAHITHITQIAYFTKISXYLEG-GVRPYHLESTMFSMGXRQSLSKVFSCC 546
           K T++   L  A I  +T  A FT      +  G RP+H    +F +     L   F+ C
Sbjct: 464 KDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAAC 523

Query: 545 TA*ILHFGNRTFCSVRSDFI 486
           T+ ++  G  T      DF+
Sbjct: 524 TSVLIFLGILTARYAFDDFL 543


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 247 RWNNSLKHNGSAKDLASVMENLKK 318
           R  N +K NG  KDL  +M+N+KK
Sbjct: 107 RVTNDVKDNGCGKDLQVMMDNVKK 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,134,075
Number of Sequences: 28952
Number of extensions: 395494
Number of successful extensions: 925
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)