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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0002
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun...    86   3e-17
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun...    86   3e-17
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun...    82   5e-16
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    81   7e-16
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun...    81   1e-15
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun...    81   1e-15
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun...    64   1e-10
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa...    36   0.034
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica...    34   0.14 
At4g20060.1 68417.m02935 expressed protein  ; expression support...    29   2.9  
At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot...    28   6.8  
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR...    28   9.0  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   9.0  

>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 441

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
 Frame = +1

Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 456
           PV  I   SF +++ +N+++  V   N N A  F+F+++ + + +SYFG    E+ I+NN
Sbjct: 49  PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108

Query: 457 FVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKS--ASKEEQAQI---TSQVTGQI 615
           FVLIYELLDEI+DFGYP+ L     +    Q+G++S  +SK +   +   T QVTG +
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAV 166



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 140 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
           P     ++  N +G+VLI+R YRDD+G N VDAFR ++
Sbjct: 2   PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHI 39



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 557 SSLPPRRNKPRLPHK*LVRLXWRREGIKYRRNELF 661
           SS P  +  P    +    + WRREG+ Y++NE+F
Sbjct: 147 SSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181


>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 438

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
 Frame = +1

Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 456
           PV  I   SF +++ +N+++  V   N N A  F+F+++ + + +SYFG    E+ I+NN
Sbjct: 49  PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108

Query: 457 FVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKS--ASKEEQAQI---TSQVTGQI 615
           FVLIYELLDEI+DFGYP+ L     +    Q+G++S  +SK +   +   T QVTG +
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAV 166



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 140 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
           P     ++  N +G+VLI+R YRDD+G N VDAFR ++
Sbjct: 2   PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHI 39



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 557 SSLPPRRNKPRLPHK*LVRLXWRREGIKYRRNELF 661
           SS P  +  P    +    + WRREG+ Y++NE+F
Sbjct: 147 SSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181


>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 33/81 (40%), Positives = 57/81 (70%)
 Frame = +1

Query: 268 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 447
           Q   PV      ++  ++ +NI+L   ++QN NAA +  FL +++DV + YF ++ EE++
Sbjct: 47  QSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106

Query: 448 KNNFVLIYELLDEILDFGYPR 510
           ++NFV++YELLDE++DFGYP+
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 620 WRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQV 790
           WR EG+K+++NE+F     V +  ++   S   +        +     + G+PEC++
Sbjct: 161 WRSEGLKFKKNEVF---LDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKL 214


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 32/81 (39%), Positives = 57/81 (70%)
 Frame = +1

Query: 268 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 447
           Q   PV      ++  ++ +N++L   ++QN NAA +  FL +++DV + YF ++ EE++
Sbjct: 47  QSNDPVAYDNGVTYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106

Query: 448 KNNFVLIYELLDEILDFGYPR 510
           ++NFV++YELLDE++DFGYP+
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 620 WRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQV 790
           WR EGI+Y++NE+F     V +  ++   S   +        +     + G+PEC++
Sbjct: 161 WRSEGIQYKKNEVF---LDVIENVNILVNSNGQIVRSDVVGALKMRTYLTGMPECKL 214


>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 451

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 31/75 (41%), Positives = 53/75 (70%)
 Frame = +1

Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 459
           P+ N+   ++FH+K   ++  A T+ NV+ ++V E L +I  V++ Y G ++E++ + NF
Sbjct: 50  PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109

Query: 460 VLIYELLDEILDFGY 504
           VL+YELLDE++DFGY
Sbjct: 110 VLVYELLDEVIDFGY 124


>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 380

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 31/75 (41%), Positives = 53/75 (70%)
 Frame = +1

Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 459
           P+ N+   ++FH+K   ++  A T+ NV+ ++V E L +I  V++ Y G ++E++ + NF
Sbjct: 50  PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109

Query: 460 VLIYELLDEILDFGY 504
           VL+YELLDE++DFGY
Sbjct: 110 VLVYELLDEVIDFGY 124


>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 415

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/66 (40%), Positives = 43/66 (65%)
 Frame = +1

Query: 310 FHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEI 489
           F I R  I   A ++  +   M  EFL ++ DV+  Y G ++E+ IK+NF+++YELLDE+
Sbjct: 58  FQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEM 117

Query: 490 LDFGYP 507
           +D G+P
Sbjct: 118 IDNGFP 123


>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 162

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 325 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 501
           A+++      Q  N   V E +   ++++  YFG + E ++  NF   Y +LDE+L  G
Sbjct: 63  ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121


>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
           to clathrin assembly protein AP19 GI:2231698 from
           [Arabidopsis thaliana]
          Length = 161

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 325 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 501
           A+++      +  N   V E +   ++++  YFG + E ++  NF   Y +LDE+L  G
Sbjct: 63  ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121


>At4g20060.1 68417.m02935 expressed protein  ; expression supported by
            MPSS
          Length = 1134

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -2

Query: 495  VQDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNIC 325
            V+DL+++L  +D N    L++L      +   H+    Q L+  G+V +LL  C     C
Sbjct: 844  VEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSC 903

Query: 324  TLDMEER 304
            T  ++ +
Sbjct: 904  TYGLQNQ 910


>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 481

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 229 CGRIQSE-CDHARQQVRSPVTNIARTSFFHIKRAN 330
           C ++ +E C+HA Q  R P+  I +  FF   RAN
Sbjct: 418 CRKLSAEACEHAVQNERLPMRVIVQVLFFEQIRAN 452


>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 771

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 298 VQCW*QVIAP--AGEHGHIHSECVHSITTNIISVDSRDQHLAFMVVNEQ 158
           V+C  +  AP  + E  H+H+ C H + T ++ +   + HL  M   E+
Sbjct: 64  VRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/37 (45%), Positives = 17/37 (45%)
 Frame = -3

Query: 839 PFSPWAXQNGXXPLXPKLGTLATPGQL*PS*PTFPSP 729
           P SP     G  P  P   T  TPG   PS PT PSP
Sbjct: 482 PSSPTTPTPGGSP--PSSPTTPTPGGSPPSSPTTPSP 516


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,575
Number of Sequences: 28952
Number of extensions: 378400
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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