Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0039
         (413 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17550.1 68415.m02031 expressed protein                             28   2.2  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   2.9  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   3.8  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   3.8  
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    27   5.0  
At2g29040.1 68415.m03530 exostosin family protein contains Pfam ...    27   5.0  
At1g03900.1 68414.m00374 expressed protein                             27   5.0  
At3g53440.2 68416.m05898 expressed protein                             27   6.6  
At3g53440.1 68416.m05897 expressed protein                             27   6.6  
At3g15710.1 68416.m01991 signal peptidase, putative similar to S...    27   6.6  
At5g42710.1 68418.m05202 hypothetical protein                          26   8.7  
At5g20370.1 68418.m02423 serine-rich protein-related contains so...    26   8.7  
At4g26190.1 68417.m03770 expressed protein                             26   8.7  
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    26   8.7  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    26   8.7  

>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 51  RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 230
           R+ D   +  T  + + D N LRR+++  E E ++      EP     + V +  PD   
Sbjct: 527 RNVDYLSQVSTPDVTVSDENELRRQINELESEVQVRTPVEEEPIQEIETIVDLGNPDKVF 586

Query: 231 LASALEAFGI 260
           +   L A G+
Sbjct: 587 VRDLLVASGL 596


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 292 GRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCD 161
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 15  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 167
           +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 243 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 103
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = -1

Query: 305 HSAERPVVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAPRVGRL*TM*LY*SRFAFKTRD 126
           ++ E P      P  Y E+L    Q  R+R G    G        T  +   R A  T  
Sbjct: 348 YTLEDPTDLKASPAKYLEKL-RELQSIRVR-GNIPLGIGLESHFSTPNIPYMRSALDTLG 405

Query: 125 ATSKPIWIAEID 90
           AT  PIW+ EID
Sbjct: 406 ATGLPIWLTEID 417


>At2g29040.1 68415.m03530 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 720

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 323 SDIWFMHSAERPVVRSYHPRDYAERL*GRSQPSRIRQGY--AHCGAPR 186
           S  W  H    P    +HP  YAE +  + +  RI + Y  +  GAPR
Sbjct: 462 SSPWNYHGFAVPYPTYFHPSTYAEIIQWQMRMRRINRRYLFSFVGAPR 509


>At1g03900.1 68414.m00374 expressed protein
          Length = 272

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 270 SAGLCRTPLRPKPA*PNPARICSLWSPESR--EALNNVTLL 154
           +AG+ R+PL P P  P  +RI S    ESR  E L++++ L
Sbjct: 207 AAGVTRSPLPPPPNDPVASRIASDGCKESRRNEPLSDLSQL 247


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 29/111 (26%), Positives = 45/111 (40%)
 Frame = +3

Query: 15  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 194
           +P  R+     L++RD++VK + D     +P    RR        RLV S      DSR 
Sbjct: 12  QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71

Query: 195 STVSISLPDSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTE 347
             ++IS      L  +L         ++S   P     +P   +  SSRT+
Sbjct: 72  KKLNISKDGFPSLRRSLR--------LSSRECPEVNKEKPKTASTSSSRTK 114


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 29/111 (26%), Positives = 45/111 (40%)
 Frame = +3

Query: 15  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 194
           +P  R+     L++RD++VK + D     +P    RR        RLV S      DSR 
Sbjct: 12  QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71

Query: 195 STVSISLPDSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTE 347
             ++IS      L  +L         ++S   P     +P   +  SSRT+
Sbjct: 72  KKLNISKDGFPSLRRSLR--------LSSRECPEVNKEKPKTASTSSSRTK 114


>At3g15710.1 68416.m01991 signal peptidase, putative similar to
           SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC
           3.4.-.-) {Canis familiaris}; contains Pfam profile:
           PF00461 signal peptidase I
          Length = 180

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 126 VSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFGIIPRMVASHHRPLGRV 305
           V+  E    +V S  +EP   RG  + + + D    A  +  F +  R +   HR + +V
Sbjct: 43  VTGSESPVVVVLSESMEPGFQRGDILFLRMTDEPIRAGEIVVFSVDGREIPIVHRAI-KV 101

Query: 306 HE 311
           HE
Sbjct: 102 HE 103


>At5g42710.1 68418.m05202 hypothetical protein 
          Length = 807

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 180 PDSRGSTVSISLPDSARLASALEAFGIIPRMVASHHRPL-GRVHEPNVRNCGSSRTEQYY 356
           P  +G ++   L  S  LA ALE  G   R+  S    +   +HE   R+ G +R+ Q +
Sbjct: 75  PYGKGKSME-KLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVF 133

Query: 357 YRNDKPS 377
            +  +PS
Sbjct: 134 VQQQQPS 140


>At5g20370.1 68418.m02423 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 175

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -2

Query: 265 GIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRET 125
           G +P  S    S     K      P    GS +C F  R+ H K +T
Sbjct: 51  GSIPKPSVVTVSSNHQTKRKCLCSPTTHPGSFRCSFHRRLEHEKSKT 97


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 140  FKTRDATSKPIWIAEIDAIGFFLNTCITAPK 48
            FKT++   KP+++ ++  +   + TCI+  K
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGK 974


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 312 PNVRNCGSSRTEQYYYRNDKPSVG*TNLSH 401
           P +R   S+   +YY++ D P+ G +NL +
Sbjct: 439 PVLRQLESAAMREYYFKADHPTSGSSNLKY 468


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
            domain-containing protein / RNA recognition motif
            (RRM)-containing protein KIAA0122 gene , Homo sapiens,
            EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
            recognition motif. (a.k.a. RRM, RBD, or RNP domain),
            PF01585: G-patch domain, weak hit to PF00641: Zn-finger
            in Ran binding protein and others
          Length = 1105

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 262  IMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRS 92
            I+P+AS A  S++ SG+   +  P      ++     + S+  R   RR+ +GS  S
Sbjct: 919  ILPSASPASVSVSGSGRRRFSETPTAGPTHRE---QPQTSYRDRAAERRNLYGSSTS 972


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,152,710
Number of Sequences: 28952
Number of extensions: 184703
Number of successful extensions: 525
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)