Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0026
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          30   1.4  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    29   3.3  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.3  
At5g42370.1 68418.m05159 expressed protein                             29   4.3  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.3  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   4.3  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   4.3  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.7  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   10.0 
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   10.0 
At5g22390.1 68418.m02612 expressed protein                             27   10.0 
At5g16970.1 68418.m01988 NADP-dependent oxidoreductase, putative...    27   10.0 

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 456 PGTGXIRFPSKPDTPRSSEPILIPKLRIQFAD 361
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 587 RVRIQSET*DDFRECHIKYIQFLRPHL 507
           R+RIQ     DF + + K+++FL PH+
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPHI 198


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 243 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 109
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 182 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 72
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 45  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 176
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 465 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 346
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 465 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 346
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 238 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 140
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 496 NSLKRT*RTNIDQTRHRXHPLPVQTRHAPVLRANPYSEVTDP 371
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 496 NSLKRT*RTNIDQTRHRXHPLPVQTRHAPVLRANPYSEVTDP 371
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 ERSGKSFLFCLSVRVPWNPIEG 182
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At5g16970.1 68418.m01988 NADP-dependent oxidoreductase, putative
           (P1) identical to probable NADP-dependent oxidoreductase
           P1, zeta-crystallin homolog [SP|Q39172][gi:886428],
           Arabidopsis thaliana; similar to allyl alcohol
           dehydrogenase [Nicotiana tabacum] GI:6692816; contains
           Pfam profile PF00107: oxidoreductase, zinc-binding
           dehydrogenase family
          Length = 345

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 587 RVRIQSET*DDFRECHIKYIQFLRPHL 507
           R+RIQ     DF + + K+++F+ PH+
Sbjct: 278 RIRIQGFVVSDFYDKYSKFLEFVLPHI 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,265,326
Number of Sequences: 28952
Number of extensions: 379893
Number of successful extensions: 1104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)