Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0011
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24450.1 68414.m03080 ribonuclease III family protein contain...    33   0.20 
At3g52330.1 68416.m05751 F-box family protein-related contains w...    30   1.8  
At1g19030.1 68414.m02369 hypothetical protein                          29   2.4  
At3g15050.1 68416.m01904 calmodulin-binding family protein simil...    29   3.2  
At3g04430.1 68416.m00469 no apical meristem (NAM) family protein...    28   7.3  
At3g52910.1 68416.m05831 expressed protein nearly identical to t...    27   9.7  
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai...    27   9.7  

>At1g24450.1 68414.m03080 ribonuclease III family protein contains
           similarity to Swiss-Prot:P51837 ribonuclease III (EC
           3.1.26.3) (RNase III) [Coxiella burnetii]
          Length = 191

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 277 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 450
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 451 VRMALLC 471
              A+LC
Sbjct: 146 SNSAILC 152


>At3g52330.1 68416.m05751 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain;  similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 307

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 355 IHQDPLRTSCLDQDQDQCLGLYPIKTHSEEDLVRMALLCED-LTE-WRELKDIYALWTYK 528
           + Q  ++T C++      LGL   K   +E +V +  LCE+ LTE    L   YAL T  
Sbjct: 13  LRQGKMKTRCINLGYLSSLGLAVRKKQKKERIVVVPELCEELLTEILSRLPSNYALLTTS 72

Query: 529 GQFEKHS 549
              + HS
Sbjct: 73  LSHDDHS 79


>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 434 WVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRT 336
           W ++  R   W     K+ +RRGS+W++K + T
Sbjct: 121 WRILSARRSLWVELVKKYLIRRGSFWLVKENTT 153


>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 259

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 404 WSWSWSKHEVRRGSWWMIKRSRTLVVRPISP 312
           W WSW +  +    W +  R++  VV+PI P
Sbjct: 199 WGWSWKERWIAARPWEI--RAQCYVVKPIKP 227


>At3g04430.1 68416.m00469 no apical meristem (NAM) family protein
           similar to CUC1 (GP:12060422)  {Arabidopsis thaliana}
          Length = 198

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/92 (25%), Positives = 36/92 (39%)
 Frame = -3

Query: 497 NSLHSVRSSHSRAIRTKSSSEWVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRTLVVRPI 318
           N LH   +      + +SS  W  I    K    + +K   R G W +   SRT+     
Sbjct: 37  NILHHEPADLPGLAKIESSHTWYFISPVEKFGKLNRTKRVSRSGHWKITGNSRTIKDVDG 96

Query: 317 SPIVISKCIAVFVIPYLSSRKLGGSSVQPQSS 222
           +PI + K +        SS  L  ++ Q Q +
Sbjct: 97  NPIGLKKFLVFQENKRSSSSSLSTTTTQQQKT 128


>At3g52910.1 68416.m05831 expressed protein nearly identical to
           transcription activator GRL4 [Arabidopsis thaliana]
           GI:21539886 (unpublished)
          Length = 548

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 418 YPI-KTHSEEDLVRMALLCEDLTEWRELKDI-YALW 519
           YP  K ++ ED+V + L  E+L +  +LKD+ Y  W
Sbjct: 460 YPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYW 495


>At1g44910.1 68414.m05146 FF domain-containing protein / WW
           domain-containing protein contains Pfam profiles
           PF01846: FF domain, PF00397: WW domain
          Length = 946

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 353 IKRSRTLVVRPISPIVISKCIAVFVIPYLSSRK-LGGSSVQPQ 228
           I++ +   VRP  P+ I+       +PY+ + K L   S QPQ
Sbjct: 45  IQQQQLFPVRPGQPVHITSSSQAVSVPYIQTNKILTSGSTQPQ 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,022,068
Number of Sequences: 28952
Number of extensions: 333867
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)