Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0003
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    29   2.6  
At3g09230.1 68416.m01097 myb family transcription factor identic...    29   2.6  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    29   2.6  
At5g44680.1 68418.m05474 methyladenine glycosylase family protei...    28   7.9  
At4g10890.1 68417.m01772 expressed protein                             28   7.9  

>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 519 LAPDLPSNCSSLKYLKCTHSDYE 587
           L+ DL +NCSSL+YL  +H+  E
Sbjct: 164 LSDDLFNNCSSLRYLSLSHNHLE 186


>At3g09230.1 68416.m01097 myb family transcription factor identical
           to transforming protein (myb) homolog GB:S22520
           [Arabidopsis thaliana]
          Length = 393

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 761 VVSATTMVVTGNGNQGSIPERKPE-KRLTTSKEASSAQITHSRHGEVVTKNND 606
           V S+   + +G G   + P   PE K  TTS E S  Q     +GE +++ +D
Sbjct: 183 VASSEETLSSGGGCHVTTPIVSPEGKEATTSMEMSEEQCVEKTNGEGISRQDD 235


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 211 EPRSYSIIPCTKYSRAFLARFEHSNLFKVKLSAHLDTHR 327
           EP    ++ C K S  F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At5g44680.1 68418.m05474 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 353

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 706 RRGSLRNGLPHPRKPAARKLPTP 638
           RR SL+   P P  P A K+P+P
Sbjct: 35  RRNSLKKSPPKPLNPIASKIPSP 57


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 116 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYV 3
           ++T I   +C RC+H S R K+R S   R   S++   +
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAI 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,128
Number of Sequences: 28952
Number of extensions: 346039
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)