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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0002
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta...    46   1e-05
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta...    46   1e-05
At5g45620.2 68418.m05607 26S proteasome regulatory subunit, puta...    40   5e-04
At3g02200.2 68416.m00199 proteasome family protein contains Pfam...    30   0.68 
At3g02200.1 68416.m00198 proteasome family protein contains Pfam...    30   0.68 
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ...    29   1.2  
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ...    29   1.2  
At5g15610.2 68418.m01827 proteasome family protein contains Pfam...    29   1.6  
At5g15610.1 68418.m01826 proteasome family protein contains Pfam...    29   1.6  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    28   2.1  
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain...    28   2.7  
At4g22070.1 68417.m03192 WRKY family transcription factor identi...    27   4.8  
At3g07670.1 68416.m00919 SET domain-containing protein similar t...    27   4.8  
At5g55530.3 68418.m06918 C2 domain-containing protein low simila...    27   6.3  
At5g55530.2 68418.m06917 C2 domain-containing protein low simila...    27   6.3  
At5g55530.1 68418.m06916 C2 domain-containing protein low simila...    27   6.3  
At2g46960.2 68415.m05866 cytochrome P450 family protein similar ...    27   6.3  
At2g46960.1 68415.m05865 cytochrome P450 family protein similar ...    27   6.3  

>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
           putative (RPN9) similar to 26S proteasome subunit p40.5
           [Homo sapiens] gi|3618343|dbj|BAA33214
          Length = 386

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/53 (39%), Positives = 35/53 (66%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
           KI ILCL+E+ F++ +  R +    IA   ++ +++VE L+MK+L+  LIE I
Sbjct: 280 KINILCLIEIIFSRPAEDRTIPLSVIAERTKLSIEDVEHLLMKSLSVHLIEGI 332


>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
           putative (RPN9) contains similarity to 26S proteasome
           subunit p40.5 GI:3618343 from [Homo sapiens]
          Length = 386

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/53 (39%), Positives = 35/53 (66%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
           KI ILCL+E+ F++ +  R +    IA   ++ +++VE L+MK+L+  LIE I
Sbjct: 280 KINILCLIEIIFSRPAEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332


>At5g45620.2 68418.m05607 26S proteasome regulatory subunit,
           putative (RPN9) contains similarity to 26S proteasome
           subunit p40.5 GI:3618343 from [Homo sapiens]
          Length = 350

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 31/46 (67%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALA 267
           KI ILCL+E+ F++ +  R +    IA   ++ +++VE L+MK+L+
Sbjct: 280 KINILCLIEIIFSRPAEDRTIPLSIIAERTKLSIEDVEHLLMKSLS 325


>At3g02200.2 68416.m00199 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 417

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
           K+ +L L+++A ++S    K+ +  I    ++   +VEL I+KA+  KLIE
Sbjct: 298 KMRLLSLVDLASDESG---KIPYTSIKDTLQVNEQDVELWIVKAITAKLIE 345


>At3g02200.1 68416.m00198 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 364

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
           K+ +L L+++A ++S    K+ +  I    ++   +VEL I+KA+  KLIE
Sbjct: 298 KMRLLSLVDLASDESG---KIPYTSIKDTLQVNEQDVELWIVKAITAKLIE 345


>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 261 LFSQSLHDEEFDFVEGYSGFTGYLLERQLPLR 356
           LF +++   E   V+  S +TG+L E Q+P+R
Sbjct: 8   LFGKTIPLPELGVVDSSSSYTGFLTETQIPVR 39


>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 261 LFSQSLHDEEFDFVEGYSGFTGYLLERQLPLR 356
           LF +++   E   V+  S +TG+L E Q+P+R
Sbjct: 8   LFGKTIPLPELGVVDSSSSYTGFLTETQIPVR 39


>At5g15610.2 68418.m01827 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 413

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           K+ +L L+++A + S    K+ +  I    ++  +EVEL ++KA+  KL+
Sbjct: 298 KMRLLSLVDLASDDSG---KIPYASIKNTLQVNDEEVELWVVKAITAKLV 344


>At5g15610.1 68418.m01826 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 442

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           K+ +L L+++A + S    K+ +  I    ++  +EVEL ++KA+  KL+
Sbjct: 298 KMRLLSLVDLASDDSG---KIPYASIKNTLQVNDEEVELWVVKAITAKLV 344


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 149 GERRSPRPPTCWLPCSPTSSSLED 78
           G+  +PRPP   LP S +SSS ED
Sbjct: 922 GDIHAPRPPQAVLPHSSSSSSEED 945


>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
           weak similarity to PRLI-interacting factor G
           (GI:11139264) [Arabidopsis thaliana]
          Length = 499

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 395 ILCLMEMA--FNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
           +LCL E+    N     R     EIAREA   L  V++LI K L  + ++
Sbjct: 306 VLCLSEVTTQMNDPGKDRGALMGEIAREADNMLWMVDILIEKKLCSEFVK 355


>At4g22070.1 68417.m03192 WRKY family transcription factor identical
           to WRKY transcription factor 31 (WRKY31) GI:15990589
           from [Arabidopsis thaliana]
          Length = 538

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +1

Query: 148 PRVHPRCRQHGACPGQXXXXXXXXXXXXXXLIYMSSINF---SAKAFMMRSSTSSRGILA 318
           PR + RC   G CP +                Y  + N     A   M  ++T++  +L 
Sbjct: 316 PRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLL 375

Query: 319 SRAISSNDSFL*DEDLL 369
           S ++SS D  +   +LL
Sbjct: 376 SGSMSSQDGLMNPTNLL 392


>At3g07670.1 68416.m00919 SET domain-containing protein similar to
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit N-methyltransferase I [Spinacia oleracea]
           GI:3403236; contains Pfam profile PF00856: SET domain
          Length = 504

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 368 NKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIED 249
           NKS+ +  LS+  + RE   P D VEL +     +K  E+
Sbjct: 306 NKSNGELLLSYGFVPREGTNPSDSVELALSLRKNDKCYEE 345


>At5g55530.3 68418.m06918 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 405 ENCDSVLNGDGLQ*ILISEEAVVRGDSP*SQNTPRRSRTPH 283
           E  DS++  D    +  S  ++++ DSP S N    + +PH
Sbjct: 246 ETSDSLVTSDAENHVTNSVTSILKQDSPESSNATNGAASPH 286


>At5g55530.2 68418.m06917 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 405 ENCDSVLNGDGLQ*ILISEEAVVRGDSP*SQNTPRRSRTPH 283
           E  DS++  D    +  S  ++++ DSP S N    + +PH
Sbjct: 246 ETSDSLVTSDAENHVTNSVTSILKQDSPESSNATNGAASPH 286


>At5g55530.1 68418.m06916 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 405 ENCDSVLNGDGLQ*ILISEEAVVRGDSP*SQNTPRRSRTPH 283
           E  DS++  D    +  S  ++++ DSP S N    + +PH
Sbjct: 246 ETSDSLVTSDAENHVTNSVTSILKQDSPESSNATNGAASPH 286


>At2g46960.2 68415.m05866 cytochrome P450 family protein similar to
           cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
           contains Pfam profile: PF00067: Cytochrome P450;
           supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
          Length = 519

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 395 ILCLMEMAFNKSSSQRKLSFEEIAREAR 312
           +L ++  A+N    +RK+S EEI  E R
Sbjct: 293 LLGILLKAYNTEGKERKMSIEEIIHECR 320


>At2g46960.1 68415.m05865 cytochrome P450 family protein similar to
           cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
           contains Pfam profile: PF00067: Cytochrome P450;
           supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
          Length = 403

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 395 ILCLMEMAFNKSSSQRKLSFEEIAREAR 312
           +L ++  A+N    +RK+S EEI  E R
Sbjct: 177 LLGILLKAYNTEGKERKMSIEEIIHECR 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,547,328
Number of Sequences: 28952
Number of extensions: 100189
Number of successful extensions: 266
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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