Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0147
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   2.7  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.7  
At5g42370.1 68418.m05159 expressed protein                             29   4.7  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.7  
At1g69220.2 68414.m07926 serine/threonine protein kinase, putati...    29   4.7  
At1g69220.1 68414.m07925 serine/threonine protein kinase, putati...    29   4.7  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   6.3  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   6.3  
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR...    28   8.3  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    28   8.3  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   8.3  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   8.3  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 458 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 363
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 245 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 111
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 184 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 74
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 47  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 178
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g69220.2 68414.m07926 serine/threonine protein kinase, putative
           identical to serine/threonine kinase [Arabidopsis
           thaliana] gi|2352084|gb|AAB68776
          Length = 809

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 576 WIRTRVLRPSADLPSRKVVSVSFRARSAHSVRPPFNG----QLRTGTDKGNPTV 725
           WI  +   P+ DLP    +S S +A S+H  R   +     Q+  G+D    T+
Sbjct: 612 WIHDKKKPPAIDLPVEASISQSMQASSSHEHRTKLHNIAGTQMEGGSDASGSTL 665


>At1g69220.1 68414.m07925 serine/threonine protein kinase, putative
           identical to serine/threonine kinase [Arabidopsis
           thaliana] gi|2352084|gb|AAB68776
          Length = 836

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 576 WIRTRVLRPSADLPSRKVVSVSFRARSAHSVRPPFNG----QLRTGTDKGNPTV 725
           WI  +   P+ DLP    +S S +A S+H  R   +     Q+  G+D    T+
Sbjct: 639 WIHDKKKPPAIDLPVEASISQSMQASSSHEHRTKLHNIAGTQMEGGSDASGSTL 692


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 589 RVRIQSET*DDFRECHIKYIQFLRPH 512
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 240 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 142
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 427 LDGKRMRPVPGLVDVRALCSS*RVSILN 510
           LDG R+R +P +  ++ LC S  ++++N
Sbjct: 869 LDGTRIRKIPKIKSLKCLCLSRNIAMVN 896


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 626 SRVGFVSCAIGTFCTTAVQRSAQN 697
           S +GFV C +G FC  A ++   N
Sbjct: 168 SAIGFVVCVVGVFCLCARRKRKMN 191


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,700,615
Number of Sequences: 28952
Number of extensions: 414349
Number of successful extensions: 1145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)