Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0134
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    30   1.5  
At4g38050.1 68417.m05374 xanthine/uracil permease family protein...    29   3.5  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   4.6  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    28   6.1  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    28   8.1  

>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 494 GAGITRLLAPDLPSNCSSLKYLKCTHSDYE 583
           G   +  L+ DL +NCSSL+YL  +H+  E
Sbjct: 157 GNSFSGTLSDDLFNNCSSLRYLSLSHNHLE 186


>At4g38050.1 68417.m05374 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 703

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +1

Query: 484 IRYWSWNYPAAGTRLALQLFLVKIFKVYSFRLRGLVRVPYRYF 612
           + ++S+ +P AGT + + + L+ +  +++  LRG+    +R F
Sbjct: 325 LAFFSYGFPQAGTCVEISVPLILLLLIFTLYLRGVSLFGHRLF 367


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 652 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 753
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 111 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSFLARFEHSNLFK 290
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S ++      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 291 VKXSAHL 311
               AHL
Sbjct: 112 KAAEAHL 118


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 207 EPRSYSIIPCTKYSSSFLARFEHSNLFK 290
           EP    ++ C K S  F + FEH  LFK
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFK 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,682,798
Number of Sequences: 28952
Number of extensions: 356098
Number of successful extensions: 926
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)