Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0130
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    32   0.19 
At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    30   0.58 
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ...    27   7.1  
At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2...    27   7.1  
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            27   7.1  
At1g55120.1 68414.m06295 beta-fructosidase, putative / beta-fruc...    27   7.1  
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    26   9.4  
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD...    26   9.4  
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD...    26   9.4  
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p...    26   9.4  

>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 250 WAHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 375
           W HA  T+ I+  +L  A RP +P++   CW     I+P+ + +
Sbjct: 85  WGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPV 128


>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 357 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPGHLRASQTCYCSISCGSKT 193
           D+C   SP+RR   G+  PL  G  +DS  V R +  H R S   Y S   G ++
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDS-GVTRTKK-HRRKSG--YTSAESGGES 465


>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 378 RNSSF-MGDNCKPQSPARRSFSGLPGPLGQGEHADSFS 268
           RN S   G +CK   P   +  G+  PL +G +  SFS
Sbjct: 205 RNGSCKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFS 242


>At2g29120.1 68415.m03539 glutamate receptor family protein (GLR2.7)
           plant glutamate receptor family, PMID:11379626
          Length = 926

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 31  GGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRN 153
           G  W  L  G + L+ S NER SSL N +  LGVR  + ++
Sbjct: 231 GYVW-LLTDGVMNLLKS-NERGSSLENMQGVLGVRSHIPKS 269


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 64 SLHQLRTAMHHHPPNQERAV 5
          S HQ RT  HHHP N    V
Sbjct: 19 SRHQRRTKSHHHPLNPPNPV 38


>At1g55120.1 68414.m06295 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:402740
          Length = 594

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 250 WAHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 375
           W H+   + ++  S   A  P QP++   CW     I+P+ + +
Sbjct: 83  WGHSTSVDLVNWISQPPAFNPSQPSDINGCWSGSVTILPNGKPV 126


>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 387 ALTRNSSFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPGHLR 238
           AL +  SF GDN  PQS   +++   P     G H   F+V R   G  R
Sbjct: 141 ALLKMKSFDGDNSNPQSSWSKTYK--PTSSNGGHH---FAVVRTTKGKPR 185


>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 279

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 43  PFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLV 144
           P+LV   +C++    +R  S++N     G+RG++
Sbjct: 136 PWLVSKHVCMLMRDAKRGGSVINISSIAGIRGML 169


>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 280

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 43  PFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLV 144
           P+LV   +C++    +R  S++N     G+RG++
Sbjct: 137 PWLVSKHVCMLMRDAKRGGSVINISSIAGIRGML 170


>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
           putative similar to laccase [Liriodendron
           tulipifera][GI:1621467]
          Length = 573

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 345 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPG 247
           P +    +F+GLPGPL      D++ +  V+PG
Sbjct: 189 PNASDAHTFNGLPGPLYNCSTKDTYKL-MVKPG 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,252,233
Number of Sequences: 28952
Number of extensions: 178833
Number of successful extensions: 414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)