Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0119
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    28   7.5  
At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase...    28   7.5  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    28   7.5  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   7.5  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   7.5  
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    27   9.9  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    27   9.9  

>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 191 WDPKDGELCLVRSKSGET-LMEAVAILTCKSIVGTGYRGERLIEPSSSWFRPK 346
           W  ++ E  +V+ +SG+  L+     +T K  VGT   GE +   +SSW R +
Sbjct: 160 WTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGT--LGELVFTDNSSWIRSR 210


>At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase PGA3
           [Arabidopsis thaliana] GI:3152948; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 395

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 717 SAIHFQGWLLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVSHERFLGALNTFGS 556
           S IHF+  LL+ VS   L+     PW   C  ++P+   +++  F     T G+
Sbjct: 281 SDIHFENILLKNVSNPILIDQEYCPW-NQCNKQKPSTIKLANISFKKIRGTSGN 333


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 622 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 729
           +T+  WP  SESAK+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 578 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 679
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 578 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 679
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -2

Query: 324 DGSISLSPL-YP--VPTIDLHVRIATAS 250
           +  IS+SPL YP  VPT+D H+ +AT S
Sbjct: 414 ENKISVSPLPYPMVVPTMDPHMTVATFS 441


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 498 PASSFE*AGVLTHLKFENRLRSFR 427
           PAS+FE + V T  +FE   RSFR
Sbjct: 290 PASNFESSSVQTSFEFEKPKRSFR 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,824,205
Number of Sequences: 28952
Number of extensions: 367560
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)