Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0115
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39690.1 68417.m05616 expressed protein                             28   5.4  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   5.4  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   5.4  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    27   7.1  
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f...    27   7.1  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   7.1  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   9.4  
At1g14740.1 68414.m01762 expressed protein                             27   9.4  

>At4g39690.1 68417.m05616 expressed protein
          Length = 650

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = -2

Query: 571 EXELGTLQTIPSPDIELSYIRLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETR---- 404
           E E   L+ +P P      +  +S     + +T+S   +DP  L+      E E +    
Sbjct: 217 EAESVKLEAVPKPGDSPIIVNAQSSSVHRESETESASPKDPAALKTPEDGIEREVQLPGS 276

Query: 403 LVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 302
           L+K + LE  D+  ST S S+ +  ++    EAF
Sbjct: 277 LLKEYNLEGSDTE-STGSSSIGE--QITKETEAF 307


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 245 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSNPAHVP 129
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 264 GRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 395
           G W +L         +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 370 SRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRCMNQMS 236
           SRG     +   S++L      F ++P  G SHH P GR  N +S
Sbjct: 119 SRGRGTGAAGSSSSQLQHNSGPF-NSPRGGVSHHNPTGRRANMIS 162


>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II
           family protein low similarity to KbaY
           (tagatose-1,6-bisphosphate aldolase) [Escherichia coli]
           GI:8895753; contains Pfam profile PF01116:
           Fructose-bisphosphate aldolase class-II
          Length = 1373

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = +3

Query: 192 VAIVILLSTRGTAVSDIWFMHR------PSGRWCELPSAGLCLNASKAEASLAESGKDML 353
           V +++++ T      D+ + H       PSG    L S       S+ E  L   GKD+ 
Sbjct: 378 VDVLVIMVTNEVQAEDVLYGHLGAVEAIPSGATVVLASTVSPAFVSQLERRLENEGKDLK 437

Query: 354 TVEPRESGGSKQ 389
            V+   SGG K+
Sbjct: 438 LVDAPVSGGVKR 449


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 313 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 453
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 72  ADIEGSKSNVAMNAWLPQ 19
           AD+ GS  NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 276 ELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 443
           EL  + LC N+ K   SL + GK+++T     S   K  + DF +    +   ++R++
Sbjct: 69  ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,394
Number of Sequences: 28952
Number of extensions: 273950
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)