Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20040
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong s... 94 9e-20
At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong s... 93 1e-19
At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong s... 93 1e-19
At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar ... 80 1e-15
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe... 74 1e-13
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp... 66 2e-11
At5g07360.1 68418.m00840 amidase family protein low similarity t... 30 1.2
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 29 2.7
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 29 2.7
At3g32410.1 68416.m04144 transcriptional repressor-related conta... 28 4.8
At1g30795.1 68414.m03765 hydroxyproline-rich glycoprotein family... 28 4.8
At4g31110.1 68417.m04415 wall-associated kinase, putative simila... 28 6.3
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 28 6.3
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 28 6.3
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 28 6.3
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 28 6.3
>At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 93.9 bits (223), Expect = 9e-20
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = +2
Query: 215 VDGGKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 394
+ GK+ + GAFTP CS +H+PG++ A++LKS G+ EI+C SVNDP+VM AWG
Sbjct: 32 IAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKT 91
Query: 395 HNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRF 508
+ V+ +AD SG + L L +L G G RS+RF
Sbjct: 92 YQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRF 130
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 132 MAPIKVGDQLPAADLF---EDSPANKVNICELTAGKKVVLFAVP-APSPRDVLKH 284
MAPI VGD +P + E+ V++ + AGKKV+LF VP A +P + H
Sbjct: 1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSH 55
>At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
GK+ + GAFTP CS H+PG+++ A++LKS GV EI+C SVNDP+VM AWG +
Sbjct: 35 GKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPE 94
Query: 404 KGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRF 508
V+ +AD SG + L L +L G G RS+RF
Sbjct: 95 NKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRF 130
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 132 MAPIKVGDQLPAADLF---EDSPANKVNICELTAGKKVVLFAVP-APSPRDVLKH 284
MAPI VGD +P + E+ ++ L AGKKV+LF VP A +P +KH
Sbjct: 1 MAPIAVGDVVPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKH 55
>At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong
similarity to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profile: PF00578
AhpC/TSA (alkyl hydroperoxide reductase and
thiol-specific antioxidant) family
Length = 162
Score = 93.1 bits (221), Expect = 1e-19
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = +2
Query: 215 VDGGKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 394
+ GK+ + GAFTP CS +H+PG++ A++LKS G+ EI+C SVNDP+VM AWG
Sbjct: 32 IAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKT 91
Query: 395 HNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRF 508
+ V+ +AD SG + L L +L G G RS+RF
Sbjct: 92 YPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRF 130
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 132 MAPIKVGDQLPAADLF---EDSPANKVNICELTAGKKVVLFAVP-APSPRDVLKH 284
MAPI VGD +P + E+ V++ + AGKKV+LF VP A +P + H
Sbjct: 1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSH 55
>At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar to
type 2 peroxiredoxin [Brassica rapa subsp. pekinensis]
GI:4928472; contains Pfam profile: PF00578 AhpC/TSA
(alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
Length = 234
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
GK+ + GAFTP CS+ H+PG+V A +L+S G+ I C+SVND +VM AW
Sbjct: 105 GKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGI 164
Query: 404 KGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRF 508
+V +L+D +G F L + +L P+G G RS+R+
Sbjct: 165 NDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRY 202
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +3
Query: 87 TNRASRRALHISQLSM-APIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVVLFAV 251
TN AS + + A I VGD+LP + L P+ V + LTAGKK +LFAV
Sbjct: 54 TNSASATTRSFATTPVTASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAV 113
Query: 252 P-APSPRDVLKH 284
P A +P KH
Sbjct: 114 PGAFTPTCSQKH 125
>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
specific antioxidant (AhpC/TSA)/mal allergen family
protein identical to SP|Q9M7T0 Putative peroxiredoxin,
mitochondrial precursor {Arabidopsis thaliana}; similar
to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 201
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
GK+ I GA+T CS+ H+P Y + DK K+ G+ ++CVSVNDP+ + W +
Sbjct: 73 GKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGA 132
Query: 404 KGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFRWSSLTARSKI 541
K + D G F K+L L +L L G RS+ RWS+ K+
Sbjct: 133 KDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSE--RWSAYVEDGKV 177
>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein
similar to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profiles PF00646:
F-box domain, PF00578: AhpC/TSA family
Length = 553
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
GK+ + GAF P CS H+ G+++ A++LKS+GV EI+C+S +DP+++ A +
Sbjct: 35 GKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSENKH- 93
Query: 404 KGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRF 508
V+ + D SG +I+ L L + G G RS+ F
Sbjct: 94 ---VKFVEDGSGEYIQLLGLELEVKDKGLGVRSRGF 126
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 132 MAPIKVGDQLPAADLF---EDSPANKVNICELTAGKKVVLFAVPAPSP 266
MAPI VGD +P + +D V++ L AGKKV+LF VP P
Sbjct: 1 MAPIDVGDFVPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFP 48
>At5g07360.1 68418.m00840 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 659
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = -1
Query: 483 SGGRLVPRSRALMKLPLGS--ASIRTFPLVLC*APQAAITYGSLTDTHTISATPSDFSLS 310
S G S ++ +GS A T+P C T+GS+ T +S + S L
Sbjct: 349 SAGPAASTSAGMVPFAIGSETAGSMTYPAARCGITALRPTFGSVGRTGVMSISESLDKLG 408
Query: 309 AFCTYPGKCVLEHPGVKAPAP 247
FC C + +K P
Sbjct: 409 PFCRTAADCAVILDAIKGKDP 429
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 373 DGGLGSSAQH*RKGAYASRSQRQLHQGSGPGHQSAAARRFP 495
DGG ++ KG + +RQ HQG G GH +A++ P
Sbjct: 338 DGGNHQKDKNGNKGRVVGQGRRQNHQG-GNGHGTASSSSHP 377
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 373 DGGLGSSAQH*RKGAYASRSQRQLHQ-GSGPGHQSAAARRFP 495
DGG ++ KG + +RQ HQ G+G GH +A++ P
Sbjct: 338 DGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHP 379
>At3g32410.1 68416.m04144 transcriptional repressor-related contains
weak similarity to Swiss-Prot:Q9Y4X4 krueppel-like
factor 12 (Transcriptional repressor AP-2rep) (HSPC122)
[Homo sapiens]
Length = 232
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -1
Query: 387 PQAAITYGSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPAPQIIQPSFPPSTHK 208
P + T GS ++PS +++ G C E +PA I SF P+ H
Sbjct: 148 PNRSPTQGSPASISRFHSSPSTLGITSILNDHGTCKGEESTSSSPASPSI--SFLPTLHP 205
Query: 207 YSPY*RENLRIN 172
+P +NL N
Sbjct: 206 MTPSQPKNLLHN 217
>At1g30795.1 68414.m03765 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR000694
Length = 109
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 264 VKAPAPQIIQPSFPPSTHKYSPY*RENLRINQQQAADPRP*LVPCL 127
V P P ++P FPP +P+ I Q P P +PCL
Sbjct: 51 VPTPLPPFLRPFFPPLQFAAAPF---GGNIPQPPLPSPPPTFLPCL 93
>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
to wall-associated kinase 1, Arabidopsis thaliana,
gb:AJ009696
Length = 756
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = -3
Query: 403 SVVLSSPSRHHI-RVINRHAHYFSNSIRFQFICVLYVSRQVCFRTSRGEGAGTANNTTFF 227
S+ L S H V ++ H +R +F ++ CF + G G+ N T
Sbjct: 79 SISLPSADSHFAYEVSDQERHESFGLVRVKFP----ITSAGCFNDGKESGGGSKMNFTGS 134
Query: 226 PAVNSQIFTLLAGESSNKSAAGS*SPTLIGAMLNC 122
P + +L+A ++K + P ++G L+C
Sbjct: 135 PFFIDRSNSLIAAGCNSKVSLMYIKPKMVGCELSC 169
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = +2
Query: 347 CVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIK------ALDLGTNLPPLGGFRSKRF 508
C +V + M + N K K+ M+A+P + + + N LG F ++
Sbjct: 677 CETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNRKQLGDFFRTKY 736
Query: 509 RWSSLTARS 535
W L ARS
Sbjct: 737 DWDLLAARS 745
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = +2
Query: 347 CVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIK------ALDLGTNLPPLGGFRSKRF 508
C +V + M + N K K+ M+A+P + + + N LG F ++
Sbjct: 677 CETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNRKQLGDFFRTKY 736
Query: 509 RWSSLTARS 535
W L ARS
Sbjct: 737 DWDLLAARS 745
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 321 FSLSAFCTYPGKCVLEHPGVK--APAPQIIQPSFPPS 217
F + C Y C HPGV+ P P +I P P+
Sbjct: 270 FMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPA 306
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 321 FSLSAFCTYPGKCVLEHPGVK--APAPQIIQPSFPPS 217
F + C Y C HPGV+ P P +I P P+
Sbjct: 270 FMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPA 306
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,657
Number of Sequences: 28952
Number of extensions: 354735
Number of successful extensions: 1033
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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