Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20035
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    50   8e-07

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = +3

Query: 291 LSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHXLI 431
           L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH ++
Sbjct: 109 LAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAIL 155



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +1

Query: 1   HLVDYRP*PFTGAIGVLTLITGXXXXXXXXXXXXXXXXXXXXXXX--AYQ*WRDISREGT 174
           HLVD  P P +G++G L    G                          +  WRD+ RE T
Sbjct: 10  HLVDPSPWPISGSLGALATTVGGVMYMHPFQGGARLLSLGLIFILYTMFVWWRDVLREST 69

Query: 175 YQGKHTILVNKGLR*G 222
            +G HT +V  G R G
Sbjct: 70  LEGHHTKVVQLGPRYG 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,157,504
Number of Sequences: 28952
Number of extensions: 96399
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)