Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20032
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    31   0.83 
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    31   0.83 
At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2) M...    30   1.5  
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i...    30   1.9  
At5g18580.1 68418.m02196 tonneau 2 (TON2) identical to tonneau 2...    28   5.9  

>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 301 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAYCRVLPQNRL 477
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N    ++ +  +L ++ L
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVL 554

Query: 478 QGSLPARSLRVYPYFFV 528
                   L + P++ +
Sbjct: 555 TVFTVTNILTLPPHYIL 571


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 301 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAYCRVLPQNRL 477
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N    ++ +  +L ++ L
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVL 554

Query: 478 QGSLPARSLRVYPYFFV 528
                   L + P++ +
Sbjct: 555 TVFTVTNILTLPPHYIL 571


>At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           SWISS-PROT:SPP03819 Glutathione-regulated
           potassium-efflux system protein kefC (K(+)/H(+)
           antiporter) [Escherichia coli]
          Length = 627

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 101 PMVNLDMKMKELCIMKLLDHILQPTMFEDI--KEIAKEYNIEKSCDKYMNVDVVSSSWRC 274
           P V LD+    + I + LD    P  F D   +E+  +   +++C   + +D   +++RC
Sbjct: 453 PFVALDVSSDRVAIGRSLD---LPVYFGDAGSREVLHKIGADRACAAAIALDTPGANYRC 509

Query: 275 IRWACSR 295
           + WA S+
Sbjct: 510 V-WALSK 515


>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
           identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
           thaliana]; Monovalent cation:proton antiporter family 2
           (CPA2 family) member, PMID:11500563
          Length = 618

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 101 PMVNLDMKMKELCIMKLLDHILQPTMFEDI--KEIAKEYNIEKSCDKYMNVDVVSSSWRC 274
           P V LD+    + I + LD    P  F D   KE+  +    ++C   + +D   +++RC
Sbjct: 445 PFVALDVSSDRVTIGRSLD---LPVYFGDAGSKEVLHKIGAGRACAAVVALDAPGANYRC 501

Query: 275 IRWACSR 295
           + WA S+
Sbjct: 502 V-WALSK 507


>At5g18580.1 68418.m02196 tonneau 2 (TON2) identical to tonneau 2
           protein (TON2) GI:11494362 from [Arabidopsis thaliana];
           contains Pfam profile: PF00036 EF hand
          Length = 480

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 188 IKEIAKEYNIEKSCDKYMNVDVVSSSWRCIRWAC 289
           ++++AK   ++K  D  +N D +++ W C+R  C
Sbjct: 89  VQKLAKYRFLKKQSDLLLNADDLAAMWVCLRENC 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,958
Number of Sequences: 28952
Number of extensions: 326930
Number of successful extensions: 913
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)