Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20028
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...   101   5e-22
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    95   4e-20
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    92   2e-19
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    43   1e-04
At5g06020.1 68418.m00667 self-incompatibility protein-related si...    28   4.3  
At4g17410.1 68417.m02607 expressed protein                             28   5.7  
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    27   9.9  
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot...    27   9.9  

>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score =  101 bits (241), Expect = 5e-22
 Identities = 45/83 (54%), Positives = 55/83 (66%)
 Frame = +3

Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
           HFNP+ K HG P D NRH GDLGN+   ++  +   + D QI L+GP+ I+GRAVV+H  
Sbjct: 62  HFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHAD 121

Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
            DD GK  H  S  TGNAGGRVA
Sbjct: 122 PDDLGKGGHELSLATGNAGGRVA 144



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  SRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
           ++ +AVL S+E + G I FTQ  DG   V G ++GL PG +GFHVH  GD + GC+STG
Sbjct: 2   AKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 42/83 (50%), Positives = 55/83 (66%)
 Frame = +3

Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
           HFNP +  HG P D  RH GDLGN+  + +  +   +VD+QI L+GP+ ++GRA V+HE 
Sbjct: 125 HFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHEL 184

Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
            DD GK  H  S  TGNAGGR+A
Sbjct: 185 KDDLGKGGHELSLTTGNAGGRLA 207



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +1

Query: 85  RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
           +A+AVL  T  + G +T TQ   G   V   ITGL PG +GFH+HE GD + GC+STG
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTG 123


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 42/82 (51%), Positives = 53/82 (64%)
 Frame = +3

Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
           HFNP ++ HG PN+  RH GDLGN++   N  + I + D  I LSG + I+GRAVV+H  
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 438 ADDYGKSDHPDSRKTGNAGGRV 503
            DD GK  H  S+ TGNAG RV
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRV 149



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +1

Query: 85  RAIAVLSTET-IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
           RA+A+++ +  +RG + F Q   G  HV G I+GL PG +GFH+H  GD + GC+STG
Sbjct: 9   RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTG 66


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +1

Query: 82  SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
           S A+A      I G + F QV      ++   TGL PG + + ++E GDL+ G  STG
Sbjct: 96  SAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTG 153


>At5g06020.1 68418.m00667 self-incompatibility protein-related
           similar to self-incompatibility [Papaver rhoeas]
           GI:3097260
          Length = 151

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 115 IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSG 237
           IRG +T   V++   ++ G        + GFH+H++G+L G
Sbjct: 42  IRGPLTRITVKNNNDYLLGIHCKSKDDDLGFHIHKEGELYG 82


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 121 GNITFTQVQDGKVHVQGGITGLPPGEYGFH 210
           GN  F   Q G   VQ G  G+ PG  GFH
Sbjct: 415 GNQYFNGFQPGFNGVQHGFNGVQPGFNGFH 444


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1703

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 300  VNRHVGDLGNVVFDENHYSRIDLVDDQISLSGP 398
            V R  GDL + V DEN+  R  L+D  +S + P
Sbjct: 962  VERMDGDLWDKVLDENNDYRRQLIDQVVSTALP 994


>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 461

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 41  RSLWRRLIMASPRRPAPLPFYPQKRLEATS 130
           R+L R   M +P +PA LP  P+K +E  S
Sbjct: 274 RTLERAESMTNPVKPAVLPVVPEKLVEEAS 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,289
Number of Sequences: 28952
Number of extensions: 287117
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)