Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20027
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35660.1 68414.m04432 expressed protein                             31   0.93 
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    29   3.7  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    28   4.9  
At1g77660.1 68414.m09042 MORN (Membrane Occupation and Recogniti...    28   4.9  
At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    28   6.5  

>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 362 KDGTPLTSNDHPQRVLLEDGLLFLRVMRGKKESDEGVYWCV 484
           +DGTP     HP  V+ ++GL  LR ++   + D G YW V
Sbjct: 338 EDGTPAF---HPH-VVQQNGLAVLRFLQSNCKEDPGAYWVV 374


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -3

Query: 573 IVRFDLKFIAE-YGNSKRSVFANASPTGLRATHQ*TPSSLSFLPRITLRKSNPSSSSTLC 397
           + +F +K +AE YG +   V       GLR     T  +L   P   + +     SS L 
Sbjct: 313 VQKFRVKLLAETYGQTTTDVLCQIGLDGLRMLDPSTSRTLRIYPLENITRCEKLDSSILA 372

Query: 396 GWS 388
            WS
Sbjct: 373 FWS 375


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
           KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -3

Query: 537 GNSKRSVFANASPTGLRATHQ*TPSSLSFLPRITLRKSNPSSSSTLCG 394
           GNSK  + AN SP+ L +T++ T S+L F  R  L ++N   +    G
Sbjct: 457 GNSKTMIIANVSPS-LCSTNE-TLSTLKFAQRAKLIQNNAKVNEDASG 502


>At1g77660.1 68414.m09042 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 421

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 326 IRRKPKPTIQWY-KDGTPLTSNDHPQRVLLEDGLLF 430
           I+ KPKP +QWY  D  P    +   R+++++G+ F
Sbjct: 142 IKHKPKP-VQWYIGDSKPEPIKEEETRLVVKEGVQF 176


>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 441 ITLRKSNPSSSSTLCGWSLEVRGVPSLYH 355
           + ++KSNP S   L  W  EVR +   +H
Sbjct: 198 VAVKKSNPDSEQGLHEWQCEVRFLGKFHH 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,144
Number of Sequences: 28952
Number of extensions: 321981
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)