Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20024
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   2.9  
At5g51650.1 68418.m06404 hypothetical protein                          29   3.8  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   3.8  
At1g56660.1 68414.m06516 expressed protein                             28   5.0  
At2g24690.1 68415.m02948 transcriptional factor B3 family protei...    28   6.6  
At5g52510.1 68418.m06514 scarecrow-like transcription factor 8 (...    27   8.8  
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ...    27   8.8  

>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 299 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 475
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 476 VLENNRV 496
             E  R+
Sbjct: 136 KDERPRL 142


>At5g51650.1 68418.m06404 hypothetical protein 
          Length = 206

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 179 ISEGKEGRGYQGSREASDRKRQEEHLDFAYQLWTKDGKEIVKSYFPI 319
           + E KEG   QG  E  ++   E+  + A+  W KDG   V   + I
Sbjct: 38  VQERKEGLEAQGKEEGVEKVLVEKEKEEAHVSWEKDGSVSVAYTYAI 84


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 382 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 290
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 185 EGKEGRGYQGSREASDRKRQEEHLDFAYQLWTKDGKE 295
           +GK+ +G +G  E  D ++++EH +   ++  KD K+
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKK 249


>At2g24690.1 68415.m02948 transcriptional factor B3 family protein
           low similarity to reproductive meristem protein 1
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 682

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 431 SKDKTS-KKVSWKFTPVLENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 607
           SK+  S K  S   T  +ENNR   +  PPR+  + S+I  + + +T    +++ +    
Sbjct: 289 SKESLSIKPSSGNMTKKVENNREASRKYPPRSRESSSAIQNQFMALTPLRDIVSQVAHDL 348

Query: 608 TTG 616
           + G
Sbjct: 349 SIG 351


>At5g52510.1 68418.m06514 scarecrow-like transcription factor 8
           (SCL8)
          Length = 640

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 466 VYPRVGKQQSLLQDLSTEDKQYLKLDNTKGSSDDRIIYGDSTAD 597
           V  RV + +++L  L   +KQ L  D+  G  DD  +  +S +D
Sbjct: 182 VQNRVHESENMLNSLRELEKQLLDDDDESGGDDDVSVITNSNSD 225


>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
           (UBP20) identical to ubiquitin-specific protease 20
           GI:11993480 [Arabidopsis thaliana]
          Length = 695

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/54 (20%), Positives = 29/54 (53%)
 Frame = -1

Query: 259 VQVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSSPPVRHQF 98
           +++ L P+ +R    + +++ +  +   EH   +V+Y   ++ + S+P + H F
Sbjct: 398 LEIDLQPY-MRNIQENEVSTKYHLYALVEHFGYSVAYGHYSSYVRSAPKIWHHF 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,095
Number of Sequences: 28952
Number of extensions: 320847
Number of successful extensions: 1186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)