Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20022
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    34   0.074
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    34   0.074
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    30   1.2  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   1.6  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   4.9  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   4.9  
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    27   8.5  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    27   8.5  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    27   8.5  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +2

Query: 80  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRN 250
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R 
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 344

Query: 251 TRSTATSCG 277
            ++ + S G
Sbjct: 345 EQAGSFSRG 353


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +2

Query: 80  ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRN 250
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R 
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRT 345

Query: 251 TRSTATSCG 277
            ++ + S G
Sbjct: 346 EQAGSFSRG 354


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 119 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTRSTATSCGSATDRKL 298
           K+Y  +L  +   AV++  ++ES G  +  Q  V  + +   RN       C + T+R L
Sbjct: 303 KVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLL 362

Query: 299 L 301
           +
Sbjct: 363 V 363


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 53  MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 154
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 119 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 235
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 119 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 235
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 27  NFSLYLRCACSPPAR--ASLN---YPRTLLTKTSRRNCTT 131
           NFSL L+C   PP +    LN   +P TL+ K+    CTT
Sbjct: 228 NFSLDLQCVFHPPKQNPHDLNIHDHPLTLMPKSISFTCTT 267


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -3

Query: 304 F*QFPVRCRPTACSSTPGVPSLVNDQVVNYILDD--GXXXXXLIFQ-ALTDSTVVVAGED 134
           F  F  R  P + SS+P    L N    N  L+D  G      +F   LTD T  VA   
Sbjct: 509 FQNFSTRILPPSVSSSPSSVLLTNSNSPNGRLEDHHGGSGRCRLFGFPLTDETTAVASAT 568

Query: 133 AV 128
           AV
Sbjct: 569 AV 570


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 256 EYCYKLWVGNGQEIVRKYFPLNF 324
           EY  KL + +G +   KYFPL F
Sbjct: 396 EYQLKLMIASGVDAANKYFPLAF 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,714
Number of Sequences: 28952
Number of extensions: 277401
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)