Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20021
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04370.1 68416.m00462 hypothetical protein contains Pfam prof...    34   0.082
At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]...    28   5.4  
At1g32500.1 68414.m04010 ATP-binding-cassette transporter, putat...    28   5.4  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    27   9.4  

>At3g04370.1 68416.m00462 hypothetical protein contains Pfam profile
           PF01657: Domain of unknown function
          Length = 332

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 590 CHIIWSFIKKDTQGGYLEQGHKYTALKLQKHGI 688
           CH+I+ F + DT G  +   HKY   +  +HG+
Sbjct: 140 CHLIYKFERIDTPGAQVNNHHKYKLFETPEHGL 172


>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 671

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 533 HHFVNQPSSGAKSDNSITTCHIIWS 607
           HH +  P++GA SD+S+   H++++
Sbjct: 130 HHSIFSPATGAVSDSSLKFTHVLYN 154


>At1g32500.1 68414.m04010 ATP-binding-cassette transporter, putative
           similar to ATP-binding-cassette transporter (ABC1)
           described in PMID:11156608
          Length = 475

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 578 SITTCHIIWSFIKKDTQGGYLEQGHKYTALKLQKHGIYV 694
           S+ + HI W+F++++ +  Y E     T  KL +H ++V
Sbjct: 278 SMASAHIKWTFVRQEAESEY-ELVEVSTGGKLGRHNVHV 315


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 258 VALGSRILSTIAHCALIVM*HKHLYVL*LMFSSHLCRGCISC--SQRFRLKI 407
           V +  R+ S +++C  I+     L  L L   SH  + C+SC  S+ FR K+
Sbjct: 214 VGVVERVNSLVSYCRHILKSDDPLSCLRLSIISHSGKECLSCCTSKMFRSKV 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,368,718
Number of Sequences: 28952
Number of extensions: 343778
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)