Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30038X
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 32 0.19
At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4) cont... 31 0.34
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 30 0.59
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 30 0.59
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 30 0.78
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 29 1.4
At3g23930.1 68416.m03006 expressed protein 29 1.4
At3g43160.1 68416.m04554 expressed protein merozoite surface pro... 29 1.8
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 29 1.8
At1g06190.1 68414.m00651 expressed protein 28 2.4
At5g01380.1 68418.m00051 expressed protein 28 3.1
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 27 4.1
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 4.1
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 27 4.1
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 27 5.5
At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finge... 27 5.5
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge... 27 5.5
At5g53930.1 68418.m06710 expressed protein 27 7.2
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 27 7.2
At4g02720.1 68417.m00368 expressed protein temporary automated f... 27 7.2
At1g48970.1 68414.m05489 eukaryotic translation initiation facto... 27 7.2
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 26 9.6
At1g61990.1 68414.m06992 mitochondrial transcription termination... 26 9.6
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.9 bits (69), Expect = 0.19
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +1
Query: 196 RSRVREIQNSSSVKTRSG-RTWMNS*RNTSTN---GANSGPRRRMSSNALKRSRP-SARF 360
RS +R ++ S KT SG +++ ++ ST+ A+ PR+R SN+ +RSR S R
Sbjct: 209 RSPLRGSRSRSISKTNSGSKSYSGERKSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRR 268
Query: 361 SRAEEEKRLAQKKKGRRR 414
S + +R+ + R R
Sbjct: 269 SLSPRRRRIHSPFRSRSR 286
>At2g28910.1 68415.m03513 CAX-interacting protein 4 (CAXIP4)
contains Pfam domain PF00098: Zinc knuckle; identical to
cDNA CAX-interacting protein 4 GI:27651998
Length = 332
Score = 31.1 bits (67), Expect = 0.34
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 223 SSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRS---RPSARFSRAEEEKRLAQ 393
SS KT S R + S + ++SG R+R + KRS R S S EEE R +
Sbjct: 170 SSVKKTSSVRKKKKRVSDESDSDSDSGDRKRRRRSMKKRSSHKRRSLSESEDEEEGRSKR 229
Query: 394 KKKGRRRK 417
+K+ R RK
Sbjct: 230 RKERRGRK 237
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 884
Score = 30.3 bits (65), Expect = 0.59
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 190 DRRSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSS-----NALKRSRPSA 354
+ RSR R +NSS K R T S ++ + S RRR S + KRS PS+
Sbjct: 800 EERSRHRRAENSSKDKRRRSPT---SNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSS 856
Query: 355 RFSRAEEEKRLAQKKKGR 408
S + +++ + K+K R
Sbjct: 857 DESSDDSKRKSSSKRKNR 874
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 30.3 bits (65), Expect = 0.59
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 190 DRRSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSS-----NALKRSRPSA 354
+ RSR R +NSS K R T S ++ + S RRR S + KRS PS+
Sbjct: 770 EERSRHRRAENSSKDKRRRSPT---SNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSS 826
Query: 355 RFSRAEEEKRLAQKKKGR 408
S + +++ + K+K R
Sbjct: 827 DESSDDSKRKSSSKRKNR 844
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 29.9 bits (64), Expect = 0.78
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +1
Query: 214 IQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFSRAEEEKRLAQ 393
+ N + V TRS + + +N N ++MS NALK S+P A F ++ L+Q
Sbjct: 395 VDNGAGVFTRSPKETAKIVADWFSN--NKEELKKMSENALKLSQPEAVFDIVKDIHHLSQ 452
Query: 394 KKK 402
+++
Sbjct: 453 QQQ 455
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 190 DRRSRVREIQNSSSVKTRSGR-TWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFSR 366
DR E +SS +R + + S R S+ S ++ K+S S+R+S
Sbjct: 856 DRHRNDSESDSSSDYHSRDKQGSRSRSKRRESSREKRSSHKKHSKHRRTKKSS-SSRYSS 914
Query: 367 AEEEKRLAQKKKGRR 411
EE+K ++KK RR
Sbjct: 915 DEEQKESRREKKRRR 929
>At3g23930.1 68416.m03006 expressed protein
Length = 224
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 210 GDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 302
G IK +D++ + QLKE EWRK+R
Sbjct: 26 GRRHLIKERDEREKVMFLQLKEAEREWRKER 56
>At3g43160.1 68416.m04554 expressed protein merozoite surface
protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
Length = 295
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 187 VDRRSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSR 345
+D+ + +S+ +TRSGR +++ +ST NS R SS K R
Sbjct: 91 IDQELKSSTGSENSTTRTRSGRGFIDYVLESSTGTENSSTRTAESSTRTKNGR 143
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 274 NTSTNGANSGPRRRMSSNALKRSRPSARFSRAEEEKRLAQKKKGRRRKGE 423
+T ++G N R SSN KR R + S A + R Q ++ G+
Sbjct: 217 DTQSSGGNGQKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGD 266
>At1g06190.1 68414.m00651 expressed protein
Length = 401
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 211 EIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPS--ARFSRAEEEKR 384
+I+NS + +R+G + S ++ GPR + ++ + AR + +EEK+
Sbjct: 97 DIENSDMLSSRNGPLFNLSSSPKFQATSSPGPREKEIVELFRKVQAQLRARAAAKKEEKK 156
Query: 385 LAQKKKGRRRKGE 423
+ + KG+ ++ E
Sbjct: 157 IEEASKGQGKESE 169
>At5g01380.1 68418.m00051 expressed protein
Length = 323
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 307 RRRMSSNALKRSRPSARFSRAEEEKRLAQKKKGRRR 414
RRRM+ +R+ R+ EEE+RL ++ + ++R
Sbjct: 264 RRRMAELEEERAATERRWMEREEERRLREEARAQKR 299
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +1
Query: 331 LKRSRPSARFSRAEEEKRLAQKKKGRRRKGECA 429
+K +P+ F+ ++ + ++KKG+++K +CA
Sbjct: 95 MKEFKPNMTFAFSQSLAQTEEEKKGKKKKKDCA 127
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 183 ESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQ 299
E+R S+ + F K ++ +Q +EY+NEW K+
Sbjct: 234 ETRESVLQQERLSFTKERESYEGTFQKQ-REYLNEWEKK 271
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 183 ESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQ 299
E+R S+ + F K ++ +Q +EY+NEW K+
Sbjct: 247 ETRESVLQQERLSFTKERESYEGTFQKQ-REYLNEWEKK 284
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 274 NTSTNGANSGPRRRMSSNALKRSRPSARFSRAEEEKRLAQKKKGRRRKGEC 426
N S+N + S +R S A K S+P + EEE+ + ++ + + + +C
Sbjct: 153 NNSSNRSKSSSKRGSESRA-KFSKPEPKDDEEEEEEGVEEEDEDEQGETQC 202
>At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 374
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 238 TRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFSRAEEEKRLAQKKK 402
T SGR + + TNG NSG ++ +S A + + A +EK + K
Sbjct: 252 TESGRKQLTP--SGITNGENSGKKKAVSEQASEDMDCAEEIETASDEKEIGNDNK 304
>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 486
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 238 TRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFSRAEEEKRLAQKKK 402
T SGR + + TNG NSG ++ +S A + + A +EK + K
Sbjct: 252 TESGRKQLTP--SGITNGENSGKKKAVSEQASEDMDCAEEIETASDEKEIGNDNK 304
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 193 RRSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFSRAE 372
++S+ + + +K S + +S +S+ ++R S + KRSR S ++
Sbjct: 24 KKSKRNKSKKIRRIKDESESSGSDSSLYSSSEDDYRRKKKRRSKLSKKRSRKRYSSSESD 83
Query: 373 EEK---RLAQKKKGRRRKGE 423
++ RL +KKK +RK E
Sbjct: 84 DDSDDDRLLKKKKRSKRKDE 103
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 223 SSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALK-RSRPSARFSRAEEEK 381
S+ +TR R+ + S+ +S PRR + NAL S+ + AEEE+
Sbjct: 866 SNKKRTRKSRSGRKESKRKSSKSKSSRPRRAAARNALSWFSKITGTSKDAEEEE 919
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +1
Query: 196 RSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFSRAEE 375
RSR R+ ++S S + R +S S + + RRR ++ KR + +R SR+
Sbjct: 112 RSRKRKSKSSRSKRRRKRSYDSDSESEGSESDSEEEDRRRRRKSSSKRKK--SRSSRSFR 169
Query: 376 EKRLAQKK 399
+KR ++K
Sbjct: 170 KKRSHRRK 177
>At1g48970.1 68414.m05489 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
guanine nucleotide exchange factor, eIF-2B, delta
subunit [Mus musculus] GI:529428; contains Pfam profile
PF01008: Initiation factor 2 subunit family
Length = 756
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 165 KPAPKQESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 305
KP PK+E P + + + + +KR D+ + +Y ++ R +A
Sbjct: 336 KPQPKKERLPVTSSVSEKTAVAVEKEKRMDVPQTQMQYDDKSRVDKA 382
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 271 RNTSTNGANSGPRRRMSSNALKRSRPSARFSRAEEEKRLAQKKKGRRRK 417
R++ G + G RR +R R ++ + + E+R +K+KGR+++
Sbjct: 64 RDSKRRGEDKGRGRR------ERDRDRGKYLKRDRERREREKEKGRKKQ 106
>At1g61990.1 68414.m06992 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 414
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 229 LMNSGSPSPAIDGLLSCLGAGFV 161
L+ GS PA+ +LSC GF+
Sbjct: 368 LLRKGSELPAVSSVLSCTDEGFL 390
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,771,862
Number of Sequences: 28952
Number of extensions: 106313
Number of successful extensions: 444
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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