Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30017
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51) ide...    28   5.0  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    28   6.6  
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    27   8.7  
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm...    27   8.7  

>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/49 (36%), Positives = 20/49 (40%)
 Frame = -1

Query: 450 HLAGNVCGCGHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 304
           H  G  CG GH  G   GC   G G    G G + G + S   V A  L
Sbjct: 781 HHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


>At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51)
           identical to obtusifoliol 14-demethylase (GI:14624983)
           [Arabidopsis thaliana]
          Length = 488

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 43  ALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNSGAYN 213
           ++ A  GK        + +T   F  +      DP  YDP R + GR     +GA++
Sbjct: 366 SVTARDGKTYDIPKGHIVATSPAFANRLPHIFKDPDTYDPERFSPGREEDKAAGAFS 422


>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 544  TENKILAEEAGKVENVGTEXEGIKVKGFYEYVGPDGVTYRVD 669
            TE ++L E+  K+E +  E EG+K     E    D  T + D
Sbjct: 966  TETQVLVEDTQKIEALTEEVEGLKANLEQEKQRADDATRKFD 1007


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 22  ICLSMTVALAAETGKYTPFQYNRVYSTVSP 111
           +CL+ TVAL +    Y  + +N  Y T +P
Sbjct: 11  VCLASTVALVSAGDPYFYYTWNVTYGTAAP 40


>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein low
           similarity to SP|P36929 SUN protein (FMU protein)
           {Escherichia coli}; contains Pfam profiles PF01189:
           NOL1/NOP2/sun family, PF01029: NusB family
          Length = 523

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 16  LAICLSMTVALAAETGKYTPFQYNRVYSTVSPF 114
           +A  LS  V L+AET K +P  + R   T  PF
Sbjct: 1   MAQLLSFRVYLSAETQKASPGSFKRTQKTRKPF 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,236
Number of Sequences: 28952
Number of extensions: 213276
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)