Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30010
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 252 2e-67
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 252 2e-67
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 250 6e-67
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 47 1e-05
At5g04470.1 68418.m00445 expressed protein 29 3.2
At1g33410.1 68414.m04136 expressed protein 29 3.2
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 4.2
At3g50610.1 68416.m05534 hypothetical protein 29 4.2
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 29 4.2
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 29 4.2
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put... 28 7.4
At1g58220.1 68414.m06612 myb family transcription factor contain... 28 7.4
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 27 9.8
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 252 bits (616), Expect = 2e-67
Identities = 122/228 (53%), Positives = 167/228 (73%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 MGREDKATWKSNYFIKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLRGSSIVLMGKNTM 236
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 237 MRKAIKDHLDN--NPALEKLLPHIKGNVGLVFTRGDLVEVRDKLLENKVQAPARPGAIAP 410
M+++++ H +N N A+ LLP ++GNVGL+FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 411 LSVVIPAHNTGLGP*KTYFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 590
+ VV+ NTGL P +T FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 591 NISPFSYGLVGKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALS 734
I PFSYGLV + VYD+G++F+PE+LD+ + L KF +G++ V +L+
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLA 228
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 252 bits (616), Expect = 2e-67
Identities = 122/228 (53%), Positives = 167/228 (73%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 MGREDKATWKSNYFIKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLRGSSIVLMGKNTM 236
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 237 MRKAIKDHLDN--NPALEKLLPHIKGNVGLVFTRGDLVEVRDKLLENKVQAPARPGAIAP 410
M+++++ H +N N A+ LLP ++GNVGL+FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 411 LSVVIPAHNTGLGP*KTYFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 590
+ VV+ NTGL P +T FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 591 NISPFSYGLVGKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALS 734
I PFSYGLV + VYD+G++F+PE+LD+ + L KF +G++ V +L+
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLA 228
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 250 bits (613), Expect = 6e-67
Identities = 124/223 (55%), Positives = 163/223 (73%), Gaps = 2/223 (0%)
Frame = +3
Query: 72 KATWKSNYFIKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLRGSSIVLMGKNTMMRKAI 251
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 252 KDHLDN--NPALEKLLPHIKGNVGLVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVI 425
+ H D N A LLP ++GNVGL+FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126
Query: 426 PAHNTGLGP*KTYFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 605
NTGL P +T FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PF
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186
Query: 606 SYGLVGKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALS 734
SYGLV + VYD+G++F PE+L++ +DL KF AGV+ + ALS
Sbjct: 187 SYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALS 229
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 47.2 bits (107), Expect = 1e-05
Identities = 39/205 (19%), Positives = 95/205 (46%), Gaps = 10/205 (4%)
Frame = +3
Query: 105 IIQLLDEYPKCFIVGADNVGSQQMQQIRXSLRGSSIVLMGKNTMMRKAIKDHLDNN--PA 278
I + +++Y ++ +N+ + + ++ R R + +G N +M+ A+ ++
Sbjct: 30 IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSG 89
Query: 279 LEKLLPHIKGNVGLVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGP*K 458
+ K+ ++G+ GL+ T EV + +R G+IA +V + GP +
Sbjct: 90 IYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKE-----GPLE 144
Query: 459 TY------FFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYG 614
+ + L +P +++KGT+E++ D + + G ++ A +L +L ++ F
Sbjct: 145 QFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLN 204
Query: 615 LVGKQVYDSGTIFAPEILDIKPEDL 689
L+ + ++ ++ ++ EDL
Sbjct: 205 LLCRWSPSDFELYREDLSELYREDL 229
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 400 PLPHCQSSFPPTTPASVHRKPISSKLFPSLPKFQRVLLK 516
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 166 RNRCSRSVXRYVAPVSCSW--EKTL*CAKPSKTTWTTIQPSRNCC 294
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 700 NLARRSSGLMSRI-SGAKIVPESYTCLPTRPYENGEMFNMLRRVASEAPTLSPGFKMCTS 524
N+ R + S I +G+ PE+Y+ + PYE E + R +++ P +P +
Sbjct: 357 NIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAE 413
Query: 523 LMISIVPFEILVGME 479
L+ + EI G E
Sbjct: 414 LVAATERMEINEGDE 428
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 DHLDNNPALEKLLPHIKGNVGLVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 431
D + +P + H KGNV + + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 432 HNTGLG 449
H+ G+G
Sbjct: 91 HSPGVG 96
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 261 LDNNPALEKLL--PHIKGNVGLVFTRGDLVEVRDKLLENK 374
+ N P ++++ PHI VGL+ T+GD+ + D L +
Sbjct: 761 ITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMDPKLNGE 800
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 394 PVPLPHCQSSFPPTTPASVHRKPISSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 573
P PL SS PP P+S +S L PS P S++ S P L P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 574 P 576
P
Sbjct: 118 P 118
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 28.3 bits (60), Expect = 5.6
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Frame = +1
Query: 265 TTIQPSRNCC---HTSRATLA*CSPAETSLRSVTNCWRTK-SRLQL-VPVPLPHCQSSFP 429
++IQP RN +S + + S ++ +SV + R++ S QL V + +P P
Sbjct: 5 SSIQPPRNFVLAKDSSTGSSSSSSSSQVKEQSVEDVSRSQPSGSQLDVSIQIP------P 58
Query: 430 PTTPASVHRKPISSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 588
TP+ + +S K SLP ++ R+LL S TS P+ + P + C
Sbjct: 59 KPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 418 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 305
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 234 MMRKAIKDHLDNNPALEKLLPHIKGNVGLVFTRGDLVEVRDKLL 365
++ + I + L N + EK PHI VGL+ T+GD+ + D L
Sbjct: 764 VLLEIITNQLVINQSREK--PHIAEWVGLMLTKGDIQNIMDPKL 805
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 27.9 bits (59), Expect = 7.4
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Frame = -3
Query: 580 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKK*VFYGPRPVLWAGMTTDNGAM 401
RR + + G + + M + + VG KK + G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVGNRLPSKK-LAVGMTPMLSSG--TIKGAQ 300
Query: 400 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 266
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 255 DHLDNNPALEKLLPHIKGN--VGLVFTRGDLVEVRDKLL 365
D N L+K +PH KGN +GLV R V + LL
Sbjct: 299 DFTPNPDFLKKTVPHFKGNPELGLVQARWSFVNKDENLL 337
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,096
Number of Sequences: 28952
Number of extensions: 413107
Number of successful extensions: 1237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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