Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30009X
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 31 0.24
At5g61150.2 68418.m07672 leo1-like family protein weak similarit... 30 0.73
At5g61150.1 68418.m07671 leo1-like family protein weak similarit... 30 0.73
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 1.7
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 29 1.7
At1g56660.1 68414.m06516 expressed protein 28 3.0
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 28 3.0
At4g19550.1 68417.m02875 expressed protein 27 3.9
At4g18600.1 68417.m02755 expressed protein 27 3.9
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 27 3.9
At4g15730.1 68417.m02394 expressed protein 27 5.2
At2g28250.1 68415.m03429 protein kinase family protein contains ... 27 5.2
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 27 6.8
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 27 6.8
At5g47940.1 68418.m05922 expressed protein 27 6.8
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 27 6.8
At3g28770.1 68416.m03591 expressed protein 27 6.8
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 31.5 bits (68), Expect = 0.24
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -3
Query: 354 KKEFTLEEEDKEKKPGWSKGKPGDQKVKEEE 262
++E EEEDK+KK K K D+K KEEE
Sbjct: 183 EEEKKKEEEDKKKKEEEDKKKKEDEKKKEEE 213
>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 623
Score = 29.9 bits (64), Expect = 0.73
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 357 KKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
++ E+ EEE++EK P +GK + + +E+ E
Sbjct: 525 EESEYETEEEEEEKSPARGRGKDSEDEYEEDAEE 558
>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 625
Score = 29.9 bits (64), Expect = 0.73
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 357 KKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
++ E+ EEE++EK P +GK + + +E+ E
Sbjct: 525 EESEYETEEEEEEKSPARGRGKDSEDEYEEDAEE 558
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -3
Query: 372 QLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEV 259
++K KKK+ +EE+KE++ G K + +K K+EEV
Sbjct: 472 KVKSSKKKKKKDKEEEKEEEAGSEKKEKKKKKDKKEEV 509
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 369 LKVVKKKEFTLEEEDKEKKP-GWSKGKPGDQKVKEEEVEA*TS*YPNH 229
LKV KK +LEE+ KEK G S G + +E+V+ TS P +
Sbjct: 331 LKVTIKKPKSLEEKAKEKADCGTSSGPKNKPEEAKEKVDGDTSSVPKN 378
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 366 KVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEE 262
K K+KE + EDK+ K KG+ GD + ++EE
Sbjct: 196 KEKKQKEESKSNEDKKVKGKKEKGEKGDLEKEDEE 230
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc
finger (ZZ type) family protein contains Pfam profiles
PF02135: TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 321 EKKPGWSKGKPGDQKVKEEEVEA 253
+K+PGW K +PG K KEE VE+
Sbjct: 878 KKEPGWPKKEPGCPK-KEELVES 899
>At4g19550.1 68417.m02875 expressed protein
Length = 212
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = -3
Query: 390 EFSFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEE 262
E+S +N + + K +++ EEE++ ++P W++ + + E
Sbjct: 145 EYSKQNSEESLLKSQYSEEEEEEAEEPDWNEDYSNEDAYRGNE 187
>At4g18600.1 68417.m02755 expressed protein
Length = 1907
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -3
Query: 384 SFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVEA 253
++R+ + V K++ L EE P W++ P D+K+ EE+++
Sbjct: 1176 TYRSSAEAVSKEK-NLPEESLPTYPSWAEVVP-DEKISREELDS 1217
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 357 KKKEFTLEEEDKEKKPGWSKGKPGDQKVK 271
KKKE EE+ +EKK G K K D++ K
Sbjct: 315 KKKEEDEEEDGEEKKEGEKKPKVDDKQSK 343
>At4g15730.1 68417.m02394 expressed protein
Length = 1059
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 372 QLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEV 259
Q+KV KKKE EE D K G + +K EE+
Sbjct: 585 QIKVKKKKEADKEESDGSKHIKTGDGNKLARVIKAEEI 622
>At2g28250.1 68415.m03429 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 565
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 345 FTLEEEDKEKKPGWSKGKPGDQKVKEEE 262
F E+ KE K GWS+G G + +EEE
Sbjct: 512 FQSNEKKKESKVGWSRG--GSKSGQEEE 537
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 411 QLQNKAAEFSFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVK--EEEVE 256
+L + E S + + K KK EEED+ K S+ K +KVK E+VE
Sbjct: 38 KLSDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVE 91
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 405 QNKAAEFSFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKE 268
+ K+ + S Q + +KK+ +++DKEK G KGKP ++K E
Sbjct: 31 EKKSKDRSKDKQKERKEKKDKHKDQKDKEK--GKEKGKPLEEKKAE 74
>At5g47940.1 68418.m05922 expressed protein
Length = 749
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 375 NQLKVVKKKEFTLEEE-DKEKKPGWSKGKPGDQKVKEEEVE 256
+Q V+ EF+ E++ + E+KPG S P D +V EE E
Sbjct: 496 SQALVITAPEFSSEDDVEIEEKPGTS-AHPDDSQVAAEESE 535
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 411 QLQNKAAEFSFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKV 274
+++ ++F +N+ K++KK + E +KEKK PGD V
Sbjct: 203 EMEELVSDFRAQNE-KLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 357 KKKEFTLEEEDKEKKPGWSKGKPGDQK 277
+KK+ ++EE K+K+ K KP D K
Sbjct: 1212 RKKQTSVEENKKQKETKKEKNKPKDDK 1238
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,418,325
Number of Sequences: 28952
Number of extensions: 152896
Number of successful extensions: 459
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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